mne-python: BUG: Mayavi hangs forever
Impossible to make mayavi/pysurfer work on an ubuntu 16.10
I followed the recommended installation steps:
conda install mayavipip install PySurferexport ETS_TOOLKIT=qt4andexport QT_API=pyqt
But mayavi’s scene hangs forever with this:
import mne
from mne.datasets import sample
data_path = sample.data_path()
fname = data_path + '/MEG/sample/sample_audvis-meg'
subjects_dir = mne.datasets.sample.data_path() + '/subjects'
stc = mne.read_source_estimate(fname)
stc.plot(subject='fsaverage', subjects_dir=subjects_dir)
Here is the system info:
mne.sys_info()
Platform: Linux-4.8.0-49-generic-x86_64-with-debian-stretch-sid
Python: 2.7.13 |Continuum Analytics, Inc.| (default, Dec 20 2016, 23:09:15) [GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]
Executable: /home/jrking/anaconda2/bin/python
mne: 0.15.dev0
numpy: 1.11.3 {lapack=mkl_intel_lp64, blas=mkl_intel_lp64}
scipy: 0.18.1
matplotlib: 1.5.1
sklearn: 0.19.dev0
nibabel: 2.1.0
mayavi: 4.5.0
pycuda: Not found
skcuda: Not found
pandas: 0.19.2
launching ipython with pylab=qt or qt4 makes PySurfer crash
/home/jrking/anaconda2/lib/python2.7/site-packages/pyface/qt/__init__.py in prepare_pyqt4()
15 # Set PySide compatible APIs.
16 import sip
---> 17 sip.setapi('QDate', 2)
18 sip.setapi('QDateTime', 2)
19 sip.setapi('QString', 2)
ValueError: API 'QDate' has already been set to version 1
Any idea where I should go from here?..
related issues and pages: https://github.com/mne-tools/mne-python/issues/3280, https://github.com/mne-tools/mne-python/issues/760, http://mne-tools.github.io/stable/install_mne_python.html, http://mne-tools.github.io/stable/advanced_setup.html
About this issue
- Original URL
- State: closed
- Created 7 years ago
- Reactions: 1
- Comments: 22 (20 by maintainers)
What does this do:
conda remove vtk mayavi conda install vtk mayavi numpy scipy matplotlib sklearn pandas
(Only include packages you actually use on the last line)
Extra packages being named seems to help conda not botch the installation.