vite: [Vite version 3.0.0-alpha.9]: Treeshaking does not work with libs.

Describe the bug

[Vite version 3.0.0-alpha.9]: Cannot treeshaking libs.

[Vite version 2.9.9]: Its ok.

Reproduction

https://stackblitz.com/edit/vitejs-vite-bqjtx1?file=src%2FApp.tsx,vite.config.ts,stats.html

System Info

System:
    OS: macOS 11.6
    CPU: (8) arm64 Apple M1
    Memory: 99.69 MB / 8.00 GB
    Shell: 5.8 - /bin/zsh
  Binaries:
    Node: 16.13.0 - ~/.nvm/versions/node/v16.13.0/bin/node
    Yarn: 1.22.17 - ~/.nvm/versions/node/v16.13.0/bin/yarn
    npm: 8.1.0 - ~/.nvm/versions/node/v16.13.0/bin/npm
  Browsers:
    Chrome: 102.0.5005.61
    Safari: 14.1.2
  npmPackages:
    @vitejs/plugin-legacy: ^1.8.0 => 1.8.2 
    @vitejs/plugin-react: ^1.3.2 => 1.3.2 
    vite: ^3.0.0-alpha.9 => 3.0.0-alpha.9

Used Package Manager

pnpm

Logs

$ pnpm run build

> vite-antd-seed@0.0.0 build /Users/sun/Desktop/work/vite-antd-seed
> vite build

vite v3.0.0-alpha.9 building for production...
✓ 42 modules transformed.
dist/assets/favicon.4b63ffc1.svg        1.49 KiB
dist/index.html                         0.53 KiB
dist/assets/TestComponent.7cc13317.js   0.12 KiB / gzip: 0.13 KiB
dist/assets/index.0d2e4644.js           0.19 KiB / gzip: 0.17 KiB
dist/assets/index.2636713a.js           5.91 KiB / gzip: 2.51 KiB
dist/assets/esm-VW3YJATR.944f0927.js    214.24 KiB / gzip: 64.88 KiB
dist/assets/index.06cb8156.css          530.03 KiB / gzip: 67.17 KiB
dist/assets/vendor.8dd48daa.js          1696.88 KiB / gzip: 538.35 KiB

(!) Some chunks are larger than 500 KiB after minification. Consider:
- Using dynamic import() to code-split the application
- Use build.rollupOptions.output.manualChunks to improve chunking: https://rollupjs.org/guide/en/#outputmanualchunks
- Adjust chunk size limit for this warning via build.chunkSizeWarningLimit.

Validations

• Follow our Code of Conduct
• Read the Contributing Guidelines.
• Read the docs.
• Check that there isn’t already an issue that reports the same bug to avoid creating a duplicate.
• Make sure this is a Vite issue and not a framework-specific issue. For example, if it’s a Vue SFC related bug, it should likely be reported to https://github.com/vuejs/core instead.
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• The provided reproduction is a minimal reproducible example of the bug.