quarkus: "Unrecognized configuration key" regression in 1.11.0.CR1

Describe the bug When running in native mode with 1.11.0.CR1, we get “Unrecognized configuration key” warnings on a list of properties. those properties are all “quarkus” properties (we do not have any warnings on our applicative properties). some of those properties come from src/main/resources/application.yml, some properties come from runtime provided “application.yml”, and some properties are not set at all in any of these 2 files. We do not have this behavior in 1.10.5 native, or 1.11.0.CR1 jvm. The interesting thing is that the program is running normally. that is those properties are correctly read from the config.

Expected behavior No warnings “Unrecognized configuration key” in native mode.

Actual behavior here is what we get at startup:

__  ____  __  _____   ___  __ ____  ______ 
 --/ __ \/ / / / _ | / _ \/ //_/ / / / __/ 
 -/ /_/ / /_/ / __ |/ , _/ ,< / /_/ /\ \   
--\___\_\____/_/ |_/_/|_/_/|_|\____/___/   
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.logserver.display-env-variables" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.freemarker.directive.base64" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.log.console.darken" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.freemarker.directive.mongodb_uri" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.freemarker.default-encoding" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.freemarker.template-exception-handler" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.freemarker.log-template-exceptions" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.smbj.hostname" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.freemarker.boolean-format" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.freemarker.object-wrapper-expose-fields" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.log.filter."org.jboss.threads".if-starts-with" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.freemarker.directive.json" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.application.name" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.freemarker.number-format" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.log.category."io.quarkus.vault".level" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.freemarker.wrap-unchecked-exceptions" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.log.category."com.lodh.arte.ocpdeploy".level" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.logserver.erl-url" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.freemarker.fallback-on-null-loop-variable" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.log.filter."org.hibernate.validator.internal.util.Version".if-starts-with" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.profile" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.log.min-level" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.freemarker.file-paths" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.freemarker.directive.indent" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.application.version" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:14,762 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.freemarker.directive.yaml" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo
2021-01-11 10:25:15,203 INFO  [com.lod.art.log.LogServerHandlerRecorder] (main) Initializing LogServer Agent
2021-01-11 10:25:15,215 INFO  [io.quarkus] (main) ocpdeploy 4.1.0-SNAPSHOT native (powered by Quarkus 1.11.0.CR1) started in 0.463s. 
2021-01-11 10:25:15,215 INFO  [io.quarkus] (main) Profile prod activated. 
2021-01-11 10:25:15,215 INFO  [io.quarkus] (main) Installed features: [cdi, config-yaml, freemarker, hibernate-validator, kubernetes-client, logserver, mutiny, openshift-client, rest-client, rest-client-jackson, smallrye-context-propagation, smbj, vault]

From all of these properties we have 3 cases:

properties coming from src/main/resources/application.yaml

quarkus:
  log:
    min-level: DEBUG
  smbj:
    hostname: ${ocpdeploy.share.hostname:""}
  freemarker:
    file-paths: ${ocpdeploy.workspace-path}
    default-encoding: UTF-8
    template-exception-handler: rethrow
    log-template-exceptions: false
    wrap-unchecked-exceptions: true
    fallback-on-null-loop-variable: true
    boolean-format: c
    number-format: computer
    object-wrapper-expose-fields: true
    directive:
      base64: ...
      indent: ...
      yaml: ...
      json: ...
      mongodb_uri: ...
  logserver:
    erl-url: ${ocpdeploy.erl.url}

which is all quarkus properties, except:

  vault:
    kv-secret-engine-version: 1

properties coming from runtime provided application.yaml

                logserver:
                  display-env-variables: false
                log:
                  category:
                    "...":
                      level: DEBUG
                    "io.quarkus.vault":
                      level: DEBUG

which is all quarkus properties except vault properties:

              quarkus:
                vault:
                  url: ...
                  authentication:
                    kubernetes:
                      role: ...
                  secret-config-kv-path:
                    creds: ...

properties not coming from our config either runtime or build time

quarkus.log.console.darken
quarkus.log.filter."org.jboss.threads".if-starts-with
quarkus.application.name
quarkus.log.filter."org.hibernate.validator.internal.util.Version".if-starts-with
quarkus.profile
quarkus.application.version

To Reproduce We tried to reproduce in a simple “getting started” example, but did not succeed (instead we stumbled upon https://github.com/quarkusio/quarkus/issues/14229). so unfortunately we do not have a reproducer.

I tried printing a few variables at startup (some coming from src/main/resources/application.yml, and some coming from the runtime provided application.yml):

    @ConfigProperty(name = "quarkus.smbj.hostname")
    String quarkusSmbjHostname;

    @ConfigProperty(name = "quarkus.freemarker.default-encoding")
    String quarkusFreemarkerDefaultEncoding;

    @ConfigProperty(name = "quarkus.logserver.display-env-variables")
    Boolean quarkusLogServerDisplayEnvVariables;

    public void execute() throws InterruptedException, TemplateException, NoSuchAlgorithmException, IOException {

        log.info("quarkus.smbj.hostname => " + quarkusSmbjHostname);
        log.info("quarkus.freemarker.default-encoding => " + quarkusFreemarkerDefaultEncoding);
        log.info("quarkus.logserver.display-env-variables => " + quarkusLogServerDisplayEnvVariables);

in jvm mode I get (which is expected):

2021-01-11 18:32:59,313 INFO (main) quarkus.smbj.hostname => ...some value...
2021-01-11 18:32:59,314 INFO (main) quarkus.freemarker.default-encoding => UTF-8
2021-01-11 18:32:59,315 INFO (main) quarkus.logserver.display-env-variables => false

in native mode I get the same values, but with the unexpected warnings, such as:

2021-01-11 17:53:50,404 WARN  [io.qua.config] (main) Unrecognized configuration key "quarkus.smbj.hostname" was provided; it will be ignored; verify that the dependency extension for this configuration is set or that you did not make a typo

so properties are read appropriately (which explains why the program is running normally). the only issue seems to be those invalid warnings.