pykeen: ValueError: need at least one array to concatenate in rank_based_evaluator.py
Describe the bug
When running a pipeline to train a model it calls to the rank_based_evaluator.py script. There, the line c_ranks = np.concatenate([ranks_flat[side, rank_type] for side in sides]) outputs the following error:
File "<__array_function__ internals>", line 5, in concatenate
ValueError: need at least one array to concatenate
How to reproduce
I haven’t developed a script to make the error reproducible, but it happens when calling the pipeline function:
results = pipeline(
training=training,
testing=testing,
validation=validation,
model=model,
model_kwargs=dict(
embedding_dim=embedding
),
loss=loss,
training_loop='sLCWA',
negative_sampler='basic',
result_tracker='tensorboard',
result_tracker_kwargs=dict(
experiment_path=logdir,
),
training_kwargs=dict(
num_epochs=epochs,
batch_size=batch_size,
sampler=sampler),
stopper='early',
stopper_kwargs=dict(
frequency=5,
patience=10,
relative_delta=0.05,
metric='adjusted_mean_rank_index',
),
random_seed=42,
device=device
)
Environment
Unable to handle parameter in AutoSF: coefficients
| Key | Value |
|---|---|
| OS | posix |
| Platform | Linux |
| Release | 3.10.0-1160.36.2.el7.x86_64 |
| Time | Mon Mar 7 17:27:26 2022 |
| Python | 3.8.12 |
| PyKEEN | 1.7.1-dev |
| PyKEEN Hash | UNHASHED |
| PyKEEN Branch | |
| PyTorch | 1.10.2 |
| CUDA Available? | false |
| CUDA Version | 10.2 |
| cuDNN Version | 7605 |
Additional information
I suspect that it’s related with some recent update, because I have other environment in which the code runs perfectly. The numpy version is the same in both environments. My current environment is the following:
Name Version Build Channel
_libgcc_mutex 0.1 main conda-forge
_openmp_mutex 4.5 1_gnu
absl-py 0.15.0 pyhd3eb1b0_0
aiohttp 3.8.1 py38h7f8727e_0
aiosignal 1.2.0 pyhd3eb1b0_0
alembic 1.7.6 pypi_0 pypi
async-timeout 4.0.1 pyhd3eb1b0_0
attrs 21.4.0 pyhd3eb1b0_0
autopage 0.5.0 pypi_0 pypi
blas 1.0 mkl conda-forge
blinker 1.4 py38h06a4308_0
bottleneck 1.3.2 py38heb32a55_1
brotlipy 0.7.0 py38h497a2fe_1001 conda-forge
bzip2 1.0.8 h7b6447c_0
c-ares 1.18.1 h7f8727e_0
ca-certificates 2021.10.8 ha878542_0 conda-forge
cachetools 4.2.2 pyhd3eb1b0_0
certifi 2021.10.8 py38h578d9bd_1 conda-forge
cffi 1.15.0 py38hd667e15_1
charset-normalizer 2.0.12 pyhd8ed1ab_0 conda-forge
class-resolver 0.3.4 pypi_0 pypi
click 8.0.4 py38h06a4308_0
click-default-group 1.2.2 pypi_0 pypi
cliff 3.10.1 pypi_0 pypi
cmaes 0.8.2 pypi_0 pypi
cmd2 2.4.0 pypi_0 pypi
colorama 0.4.4 pyh9f0ad1d_0 conda-forge
colorlog 6.6.0 pypi_0 pypi
cryptography 35.0.0 py38ha5dfef3_0 conda-forge
cudatoolkit 10.2.89 hfd86e86_1
dataclasses 0.8 pyh6d0b6a4_7
dataclasses-json 0.5.6 pypi_0 pypi
decorator 4.4.2 py_0 conda-forge
docdata 0.0.3 pypi_0 pypi
docrep 0.3.2 pypi_0 pypi
ffmpeg 4.3 hf484d3e_0 pytorch
freetype 2.11.0 h70c0345_0
frozenlist 1.2.0 py38h7f8727e_0
giflib 5.2.1 h7b6447c_0
gmp 6.2.1 h2531618_2
gnutls 3.6.15 he1e5248_0
google-auth 1.33.0 pyhd3eb1b0_0
google-auth-oauthlib 0.4.1 py_2
googledrivedownloader 0.4 pyhd3deb0d_1 conda-forge
greenlet 1.1.2 pypi_0 pypi
grpcio 1.42.0 py38hce63b2e_0
html5lib 1.1 pyh9f0ad1d_0 conda-forge
idna 3.3 pyhd8ed1ab_0 conda-forge
importlib-metadata 4.11.2 pypi_0 pypi
importlib-resources 5.4.0 pypi_0 pypi
inflect 5.4.0 pypi_0 pypi
intel-openmp 2021.4.0 h06a4308_3561
isodate 0.6.1 pyhd8ed1ab_0 conda-forge
jinja2 3.0.3 pyhd8ed1ab_0 conda-forge
joblib 1.1.0 pyhd8ed1ab_0 conda-forge
jpeg 9d h7f8727e_0
lame 3.100 h7b6447c_0
lcms2 2.12 h3be6417_0
ld_impl_linux-64 2.35.1 h7274673_9
libblas 3.9.0 12_linux64_mkl conda-forge
libcblas 3.9.0 12_linux64_mkl conda-forge
libffi 3.3 he6710b0_2
libgcc-ng 9.3.0 h5101ec6_17
libgfortran-ng 7.5.0 h14aa051_20 conda-forge
libgfortran4 7.5.0 h14aa051_20 conda-forge
libgomp 9.3.0 h5101ec6_17
libiconv 1.15 h63c8f33_5
libidn2 2.3.2 h7f8727e_0
liblapack 3.9.0 12_linux64_mkl conda-forge
libpng 1.6.37 hbc83047_0
libprotobuf 3.19.1 h4ff587b_0
libstdcxx-ng 9.3.0 hd4cf53a_17
libtasn1 4.16.0 h27cfd23_0
libtiff 4.2.0 h85742a9_0
libunistring 0.9.10 h27cfd23_0
libuv 1.40.0 h7b6447c_0
libwebp 1.2.2 h55f646e_0
libwebp-base 1.2.2 h7f8727e_0
lz4-c 1.9.3 h295c915_1
mako 1.1.6 pypi_0 pypi
markdown 3.3.4 py38h06a4308_0
markupsafe 2.1.0 pypi_0 pypi
marshmallow 3.14.1 pypi_0 pypi
marshmallow-enum 1.5.1 pypi_0 pypi
mkl 2021.4.0 h06a4308_640
mkl-service 2.4.0 py38h7f8727e_0
mkl_fft 1.3.1 py38hd3c417c_0
mkl_random 1.2.2 py38h51133e4_0
more-click 0.0.6 pypi_0 pypi
more-itertools 8.12.0 pypi_0 pypi
multidict 5.2.0 py38h7f8727e_2
mypy-extensions 0.4.3 pypi_0 pypi
ncurses 6.3 h7f8727e_2
nettle 3.7.3 hbbd107a_1
networkx 2.5.1 pyhd8ed1ab_0 conda-forge
numexpr 2.8.1 py38h6abb31d_0
numpy 1.20.3 pypi_0 pypi
oauthlib 3.1.0 py_0
openh264 2.1.1 h4ff587b_0
openssl 1.1.1m h7f8727e_0
optuna 2.10.0 pypi_0 pypi
packaging 21.3 pyhd3eb1b0_0
pandas 1.3.5 pypi_0 pypi
pbr 5.8.1 pypi_0 pypi
pillow 9.0.1 py38h22f2fdc_0
pip 21.2.4 py38h06a4308_0
prettytable 3.2.0 pypi_0 pypi
protobuf 3.19.1 py38h295c915_0
pyasn1 0.4.8 pyhd3eb1b0_0
pyasn1-modules 0.2.8 py_0
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pyg 2.0.3 py38_torch_1.10.0_cu102 pyg
pyjwt 1.7.1 py38_0
pykeen 1.7.1.dev0 pypi_0 pypi
pyopenssl 22.0.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.7 pyhd8ed1ab_0 conda-forge
pyperclip 1.8.2 pypi_0 pypi
pysocks 1.7.1 py38h578d9bd_4 conda-forge
pystow 0.4.0 pypi_0 pypi
python 3.8.12 h12debd9_0
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-louvain 0.15 pyhd8ed1ab_1 conda-forge
python_abi 3.8 2_cp38 conda-forge
pytorch 1.10.2 py3.8_cuda10.2_cudnn7.6.5_0 pytorch
pytorch-cluster 1.5.9 py38_torch_1.10.0_cu102 pyg
pytorch-mutex 1.0 cuda pytorch
pytorch-scatter 2.0.9 py38_torch_1.10.0_cu102 pyg
pytorch-sparse 0.6.12 py38_torch_1.10.0_cu102 pyg
pytorch-spline-conv 1.2.1 py38_torch_1.10.0_cu102 pyg
pytz 2021.3 pyhd8ed1ab_0 conda-forge
pyyaml 6.0 pypi_0 pypi
rdflib 6.1.1 pyhd8ed1ab_0 conda-forge
readline 8.1.2 h7f8727e_1
requests 2.27.1 pyhd8ed1ab_0 conda-forge
requests-oauthlib 1.3.0 py_0
rexmex 0.1.0 pypi_0 pypi
rsa 4.7.2 pyhd3eb1b0_1
scikit-learn 1.0.2 py38h51133e4_1
scipy 1.8.0 pypi_0 pypi
setuptools 58.0.4 py38h06a4308_0
six 1.16.0 pyhd3eb1b0_1
sklearn 0.0 pypi_0 pypi
sqlalchemy 1.4.32 pypi_0 pypi
sqlite 3.37.2 hc218d9a_0
stevedore 3.5.0 pypi_0 pypi
tabulate 0.8.9 pypi_0 pypi
tensorboard 2.6.0 py_1
tensorboard-data-server 0.6.0 py38hca6d32c_0
tensorboard-plugin-wit 1.6.0 py_0
threadpoolctl 3.1.0 pyh8a188c0_0 conda-forge
tk 8.6.11 h1ccaba5_0
torchaudio 0.10.2 py38_cu102 pytorch
torchvision 0.11.3 py38_cu102 pytorch
tqdm 4.63.0 pyhd8ed1ab_0 conda-forge
typing-extensions 3.10.0.2 hd3eb1b0_0
typing-inspect 0.7.1 pypi_0 pypi
typing_extensions 3.10.0.2 pyh06a4308_0
urllib3 1.26.8 pyhd8ed1ab_1 conda-forge
wcwidth 0.2.5 pypi_0 pypi
webencodings 0.5.1 py_1 conda-forge
werkzeug 2.0.3 pyhd3eb1b0_0
wheel 0.37.1 pyhd3eb1b0_0
wrapt 1.13.3 pypi_0 pypi
xz 5.2.5 h7b6447c_0
yacs 0.1.8 pyhd8ed1ab_0 conda-forge
yaml 0.2.5 h516909a_0 conda-forge
yarl 1.6.3 py38h27cfd23_0
zipp 3.7.0 pyhd3eb1b0_0
zlib 1.2.11 h7f8727e_4
zstd 1.4.9 haebb681_0
About this issue
- Original URL
- State: closed
- Created 2 years ago
- Comments: 17 (7 by maintainers)
Thank you, now it’s working!