phpDocumentor: Transform doesn't happen on Windows.

PHPDocumentor v2.0.0a12 on Windows, PHAR version:

W:\src\frmwrk>php ..\phpdocumentor.phar

Initializing parser and collecting files .. OK
Parsing files
Parsing W:\src\frmwrk\index.php
  No DocBlock was found for property $smarty
  No DocBlock was found for property $flash_data
  No DocBlock was found for property $config
  No DocBlock was found for property $shorthand
  No DocBlock was found for property $libs
  No DocBlock was found for property $action
  No DocBlock was found for method __construct()
  Argument $asset is missing from the Docblock of get_asset()
  Argument $class is missing from the Docblock of add_message()
  Argument $message is missing from the Docblock of add_message()
  Argument $key is missing from the Docblock of get_flashdata()
  Argument $key is missing from the Docblock of add_flashdata()
  Argument $value is missing from the Docblock of add_flashdata()
Storing structure.xml in "W:\src\frmwrk\doc\output\structure.xml" .. OK
Initializing transformer .. OK
Processing behaviours .. OK
Executing transformations
PHP Warning:  XSLTProcessor::transformToUri(): No stylesheet associated to this
object in phar://W:/src/phpdocumentor.phar/src/phpDocumentor/Plugin/Core/Transformer/Writer/Xsl.php on line 116

Warning: XSLTProcessor::transformToUri(): No stylesheet associated to this object in phar://W:/src/phpdocumentor.phar/src/phpDocumentor/Plugin/Core/Transformer/
Writer/Xsl.php on line 116
PHP Warning:  XSLTProcessor::transformToUri(): No stylesheet associated to this
object in phar://W:/src/phpdocumentor.phar/src/phpDocumentor/Plugin/Core/Transformer/Writer/Xsl.php on line 104

Warning: XSLTProcessor::transformToUri(): No stylesheet associated to this object in phar://W:/src/phpdocumentor.phar/src/phpDocumentor/Plugin/Core/Transformer/
Writer/Xsl.php on line 104
PHP Warning:  XSLTProcessor::transformToUri(): No stylesheet associated to this
object in phar://W:/src/phpdocumentor.phar/src/phpDocumentor/Plugin/Core/Transformer/Writer/Xsl.php on line 104

Warning: XSLTProcessor::transformToUri(): No stylesheet associated to this object in phar://W:/src/phpdocumentor.phar/src/phpDocumentor/Plugin/Core/Transformer/
Writer/Xsl.php on line 104
PHP Warning:  XSLTProcessor::transformToUri(): No stylesheet associated to this
object in phar://W:/src/phpdocumentor.phar/src/phpDocumentor/Plugin/Core/Transformer/Writer/Xsl.php on line 104

[truncated]

This only happens with PHAR version – appears to be a problem with PHAR?