nodegit: `npm install` fails on `lifecycleScripts/preinstall`

When running npm install on mac os sierra 10.12.1, npm gives me the error

Error: Command failed: /Users/roman/projects/nodegit/vendor/libssh2/configure --with-libssl-prefix=/Users/roman/projects/nodegit/vendor/openssl/openssl
/Users/roman/projects/nodegit/vendor/libssh2/missing: Unknown --is-lightweight option

when it tries to configure libssh2. I’m using an up-to-date version of xcode with CLT installed.

Full error trace:

npm install

> nodegit@0.16.0 install /Users/roman/projects/nodegit
> node lifecycleScripts/preinstall && node lifecycleScripts/install

[nodegit] Running pre-install script
[nodegit] Configuring libssh2.
{ Error: Command failed: /Users/roman/projects/nodegit/vendor/libssh2/configure --with-libssl-prefix=/Users/roman/projects/nodegit/vendor/openssl/openssl
/Users/roman/projects/nodegit/vendor/libssh2/missing: Unknown `--is-lightweight' option
Try `/Users/roman/projects/nodegit/vendor/libssh2/missing --help' for more information
configure: WARNING: 'missing' script is too old or missing
configure: error: in `/Users/roman/projects/nodegit/vendor/libssh2':
configure: error: C compiler cannot create executables
See `config.log' for more details

    at ChildProcess.exithandler (child_process.js:206:12)
    at emitTwo (events.js:106:13)
    at ChildProcess.emit (events.js:191:7)
    at maybeClose (internal/child_process.js:877:16)
    at Socket.<anonymous> (internal/child_process.js:334:11)
    at emitOne (events.js:96:13)
    at Socket.emit (events.js:188:7)
    at Pipe._handle.close [as _onclose] (net.js:498:12)
  killed: false,
  code: 77,
  signal: null,
  cmd: '/Users/roman/projects/nodegit/vendor/libssh2/configure --with-libssl-prefix=/Users/roman/projects/nodegit/vendor/openssl/openssl' }
/Users/roman/projects/nodegit/vendor/libssh2/missing: Unknown `--is-lightweight' option
Try `/Users/roman/projects/nodegit/vendor/libssh2/missing --help' for more information
configure: WARNING: 'missing' script is too old or missing
configure: error: in `/Users/roman/projects/nodegit/vendor/libssh2':
configure: error: C compiler cannot create executables
See `config.log' for more details

[nodegit] ERROR - Could not finish preinstall
{ Error: Command failed: /Users/roman/projects/nodegit/vendor/libssh2/configure --with-libssl-prefix=/Users/roman/projects/nodegit/vendor/openssl/openssl
/Users/roman/projects/nodegit/vendor/libssh2/missing: Unknown `--is-lightweight' option
Try `/Users/roman/projects/nodegit/vendor/libssh2/missing --help' for more information
configure: WARNING: 'missing' script is too old or missing
configure: error: in `/Users/roman/projects/nodegit/vendor/libssh2':
configure: error: C compiler cannot create executables
See `config.log' for more details
[nodegit] ERROR - Could not finish preinstall
{ Error: Command failed: /Users/roman/projects/nodegit/vendor/libssh2/configure --with-libssl-prefix=/Users/roman/projects/nodegit/vendor/openssl/openssl
/Users/roman/projects/nodegit/vendor/libssh2/missing: Unknown `--is-lightweight' option
Try `/Users/roman/projects/nodegit/vendor/libssh2/missing --help' for more information
configure: WARNING: 'missing' script is too old or missing
configure: error: in `/Users/roman/projects/nodegit/vendor/libssh2':
configure: error: C compiler cannot create executables
See `config.log' for more details

    at ChildProcess.exithandler (child_process.js:206:12)
    at emitTwo (events.js:106:13)
    at ChildProcess.emit (events.js:191:7)
    at maybeClose (internal/child_process.js:877:16)
    at Socket.<anonymous> (internal/child_process.js:334:11)
    at emitOne (events.js:96:13)
    at Socket.emit (events.js:188:7)
    at Pipe._handle.close [as _onclose] (net.js:498:12)
  killed: false,
  code: 77,
  signal: null,
  cmd: '/Users/roman/projects/nodegit/vendor/libssh2/configure --with-libssl-prefix=/Users/roman/projects/nodegit/vendor/openssl/openssl' }

npm ERR! Darwin 16.1.0
npm ERR! argv "/Users/roman/.nvm/versions/node/v6.9.1/bin/node" "/Users/roman/.nvm/versions/node/v6.9.1/bin/npm" "install"
npm ERR! node v6.9.1
npm ERR! npm  v3.10.8
npm ERR! code ELIFECYCLE
npm ERR! nodegit@0.16.0 install: `node lifecycleScripts/preinstall && node lifecycleScripts/install`
npm ERR! Exit status 1
npm ERR!
npm ERR! Failed at the nodegit@0.16.0 install script 'node lifecycleScripts/preinstall && node lifecycleScripts/install'.
npm ERR! Make sure you have the latest version of node.js and npm installed.
npm ERR! If you do, this is most likely a problem with the nodegit package,
npm ERR! not with npm itself.
npm ERR! Tell the author that this fails on your system:
npm ERR!     node lifecycleScripts/preinstall && node lifecycleScripts/install
npm ERR! You can get information on how to open an issue for this project with:
npm ERR!     npm bugs nodegit
npm ERR! Or if that isn't available, you can get their info via:
npm ERR!     npm owner ls nodegit
npm ERR! There is likely additional logging output above.

npm ERR! Please include the following file with any support request:
npm ERR!     /Users/roman/projects/nodegit/npm-debug.log