Node: fmriprep_wf.single_subject_18_wf.func_preproc_task_IncidentalencodingtaskusingPosnercueingparadigmwithobjectvgreeblejudgment_run_09_wf.bold_reg_wf.bbreg_wf.lta2fsl_fwd
Working directory: /scratch/03763/oesteban/fmriprep-phase1/work/ds000110/fmriprep_wf/single_subject_18_wf/func_preproc_task_IncidentalencodingtaskusingPosnercueingparadigmwithobject
vgreeblejudgment_run_09_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd
Node inputs:
args = <undefined>
environ = {}
ignore_exception = False
in_fsl = <undefined>
in_itk = <undefined>
in_lta = /scratch/03763/oesteban/fmriprep-phase1/work/ds000110/fmriprep_wf/single_subject_18_wf/func_preproc_task_IncidentalencodingtaskusingPosnercueingparadigmwithobjectvgreebleju
dgment_run_09_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta
in_mni = <undefined>
in_niftyreg = <undefined>
in_reg = <undefined>
invert = <undefined>
ltavox2vox = <undefined>
out_fsl = True
out_itk = <undefined>
out_lta = <undefined>
out_mni = <undefined>
out_reg = <undefined>
source_file = <undefined>
...skipping...
result = self._interface.run()
File "/usr/local/miniconda/lib/python3.6/site-packages/niworkflows/nipype/interfaces/base.py", line 1088, in run
runtime = self._run_interface(runtime)
File "/usr/local/miniconda/lib/python3.6/site-packages/niworkflows/nipype/interfaces/base.py", line 1657, in _run_interface
self.raise_exception(runtime)
File "/usr/local/miniconda/lib/python3.6/site-packages/niworkflows/nipype/interfaces/base.py", line 1603, in raise_exception
**runtime.dictcopy()))
RuntimeError: Command:
lta_convert --inlta /scratch/03763/oesteban/fmriprep-phase1/work/ds000110/fmriprep_wf/single_subject_18_wf/func_preproc_task_IncidentalencodingtaskusingPosnercueingparadigmwithobjec
tvgreeblejudgment_run_09_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta --outfsl /scratch/03763/oesteban/fmriprep-phase1/work/ds000110/fmriprep_wf/single_subject_18_wf/func_preproc_task
_IncidentalencodingtaskusingPosnercueingparadigmwithobjectvgreeblejudgment_run_09_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat
Standard output:
$Id: lta_convert.cpp,v 1.9.2.1 2016/08/09 02:33:22 zkaufman Exp $
--inlta: /scratch/03763/oesteban/fmriprep-phase1/work/ds000110/fmriprep_wf/single_subject_18_wf/func_preproc_task_IncidentalencodingtaskusingPosnercueingparadigmwithobjectvgreebleju
dgment_run_09_wf/bold_reg_wf/bbreg_wf/lta_concat/out.lta input LTA transform.
--outfsl: /scratch/03763/oesteban/fmriprep-phase1/work/ds000110/fmriprep_wf/single_subject_18_wf/func_preproc_task_IncidentalencodingtaskusingPosnercueingparadigmwithobjectvgreeblej
udgment_run_09_wf/bold_reg_wf/bbreg_wf/lta2fsl_fwd/out.mat output FSL matrix.
Standard error:
LTAchangeType: dst geometry must be valid
Return code: 252
No idea, I’m going to first make sure this new ldconfig addresses the problem at hand. Then we can get deeper into #749