funannotate: Not sure this is exiting loop
this was the RNAseq
@A00953:17:HTJKFDSXX:4:1101:6696:1000 1:N:0:GTGTCGGA+GCTTGCGC
GTCTGGCCATCCTTGGAGATACCAGCTTCGAACTCACCAGTACCGGCAGCAATGATAAGGATAGCGCAATCAGCCTGGGAGGTACCAGTAATCATGTTCTT
+
FFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
and R2
@A00953:17:HTJKFDSXX:4:1101:6696:1000 2:N:0:GTGTCGGA+GCTTGCGC
CTGGAAGTTCGAGACCCCCAAGTACCACGTCACTGTCATCGATGCCCCTGGCCATCGTGACTTCATCAAGAACATGATTACTGGTACCTCCCAGGCTGATT
+
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFF
Not sure why this isn’t triggering the loop break as expected.
About this issue
- Original URL
- State: closed
- Created 4 years ago
- Comments: 24 (8 by maintainers)
Commits related to this issue
- remove PE RNAseq fix, repair logic related to #485 — committed to nextgenusfs/funannotate by deleted user 4 years ago
thanks!! this is good.
I’m okay removing the “fix” – just print those then to terminal and log with
log.errorand then exit if check == False.hahh okay I think I know… ! my script:
instead of