vscode-jupyter: Python Kernel dies when using ibm_db.connect

Issue Type: Bug

My python kernel dies when I run ibm_db.connect() or ibm_db_dbi.connect() in VS Code Jupyter notebook cells. Here is the console output:

Error 08:48:19: Disposing session as kernel process died ExitCode: undefined, Reason: /usr/local/lib/python3.9/site-packages/traitlets/traitlets.py:2202: FutureWarning: Supporting extra quotes around strings is deprecated in traitlets 5.0. You can use 'hmac-sha256' instead of '"hmac-sha256"' if you require traitlets >=5.
  warn(
/usr/local/lib/python3.9/site-packages/traitlets/traitlets.py:2157: FutureWarning: Supporting extra quotes around Bytes is deprecated in traitlets 5.0. Use 'b13bc39e-6f5f-4a5e-b875-93a86653eb31' instead of 'b"b13bc39e-6f5f-4a5e-b875-93a86653eb31"'.
  warn(

Info 08:48:19: Dispose Kernel process
Error 08:48:19: Raw kernel process exited code: undefined

I cannot reproduce the issue outside of the VS Code Jupyter renderer; the same function runs fine as a python script in VS Code and in a local Jupyterlab environment. In all cases, I’m using the same python environment and packages.

MacOS 12.2.1 Python 3.9.10 python3 -m pip install ipykernel jupyterlab pandas ibm-db

Extension version: 2022.2.1924087327 VS Code version: Code 1.65.2 (c722ca6c7eed3d7987c0d5c3df5c45f6b15e77d1, 2022-03-10T14:33:49.188Z) OS version: Darwin x64 21.3.0 Restricted Mode: No

System Info

Item	Value
CPUs	Intel® Core™ i9-9980HK CPU @ 2.40GHz (16 x 2400)
GPU Status	2d_canvas: enabled gpu_compositing: enabled metal: disabled_off multiple_raster_threads: enabled_on oop_rasterization: enabled opengl: enabled_on rasterization: enabled skia_renderer: disabled_off_ok video_decode: enabled webgl: enabled webgl2: enabled
Load (avg)	2, 2, 2
Memory (System)	32.00GB (3.73GB free)
Process Argv	–crash-reporter-id 91bde56a-ddbf-4e4b-9ab2-5db38b83b07e
Screen Reader	no
VM	0%

Extensions (11)

Extension	Author (truncated)	Version
gather	ms-	2022.3.0
python	ms-	2022.2.1924087327
vscode-pylance	ms-	2022.3.1
jupyter	ms-	2022.2.1030672458
jupyter-renderers	ms-	1.0.6
remote-containers	ms-	0.224.2
remote-ssh	ms-	0.76.1
remote-ssh-edit	ms-	0.76.1
autodocstring	njp	0.6.1
vscode-data-preview	Ran	2.3.0
vscodeintellicode	Vis	1.2.17

A/B Experiments

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vsreu685:30147344
python383:30185418
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binariesv615:30325510
bridge0708:30335490
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vsc1dst:30438360
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wslgetstarted:30449410
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pythonvsnew555:30450902
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vscgsvidc:30447482
cppdebugcf:30451567
pynewfile477cf:30450039

About this issue

Original URL
State: closed
Created 2 years ago
Reactions: 5
Comments: 32 (14 by maintainers)

Most upvoted comments

@DonJayamanne I created an .env file in my Projects folder with the DYLD_LIBRARY_PATH hard-coded and ibm_db.connect() now works in VSCode Jupyter. Hallelujah!

I use VS Code all the time since I run many notebooks that do not depend on a Db2 connection. To be honest, I use jaydebeapi on my laptop but wished to use ibm-db since it’s the default connector in our production environment. Now I can edit and run the same notebook code in both places. Thank you so much for you help.

My only feedback is that your documentation could do better at explaining how VS Code reads env variables, since it has very specific limitations and requirements. I originally believed that VS Code was reading my .zshenv file correctly because I see this in my test.ipynb:

!echo $DYLD_LIBRARY_PATH
/usr/local/Cellar/gcc/11.2.0_3/lib/gcc/11:/Applications/dsdriver/lib:

…yet the kernel crashed when I ran ibm_db.connect()

VS Code requires me to store that DYLD_LIBRARY_PATH in an .env file in my VS Code workspace. When I restart VS Code and run !echo $DYLD_LIBRARY_PATH, I see the same output but the kernel no longer crashes.

Any way, thank you again for all your patience and help. I appreciate it immensely.

parodayco on Apr 14, 2022

I’m experiencing the same issue when I run dataframe.to_parquet().

error message:

Error 10:32:49: Disposing session as kernel process died ExitCode: undefined, Reason: /home/kfchou/anaconda3/envs/obs-resp/lib/python3.8/site-packages/traitlets/traitlets.py:2202: FutureWarning: Supporting extra quotes around strings is deprecated in traitlets 5.0. You can use 'hmac-sha256' instead of '"hmac-sha256"' if you require traitlets >=5.
  warn(
/home/kfchou/anaconda3/envs/obs-resp/lib/python3.8/site-packages/traitlets/traitlets.py:2157: FutureWarning: Supporting extra quotes around Bytes is deprecated in traitlets 5.0. Use '684fb716-4f0e-4ca1-b66c-fea21b2dfa18' instead of 'b"684fb716-4f0e-4ca1-b66c-fea21b2dfa18"'.
  warn(

Info 10:32:49: Dispose Kernel process

I’m running Ubuntu (WSL) in windows.

Python 3.8.10

VS code info: Version: 1.65.0 (user setup) Commit: b5205cc8eb4fbaa726835538cd82372cc0222d43 Date: 2022-03-02T11:12:08.962Z Electron: 13.5.2 Chromium: 91.0.4472.164 Node.js: 14.16.0 V8: 9.1.269.39-electron.0 OS: Windows_NT x64 10.0.19042

edit: My issue was resolved by using pyarrow rather than fastparquet

kfchou on Mar 16, 2022