vscode-jupyter: Kernel won't start due to connection timeout

Environment data

VS Code version: 1.83.1
Jupyter Extension version (available under the Extensions sidebar): v2023.9.1102792234
Python Extension version (available under the Extensions sidebar): v2023.18.0
OS (Windows | Mac | Linux distro) and version: Mac (Intel)
Python and/or Anaconda version: 3.11.6
Type of virtual environment used (N/A | venv | virtualenv | conda | …): N/A
Jupyter server running: Local | Remote | N/A

Expected behaviour

When I close the notebook, or choose Restart Kernel, the kernal restarts and I can run cells again.

Actual behaviour

It gets stuck on interrupting the kernel. Closing the file, and quittting vscode both do not fix the issue. The first cell I try to run remains stuck on pending. The only work around I could figure out was turning the running cell into markdown, running a different cell, and then turning the first cell back to code before running again. Talk about a headache.

Steps to reproduce:

[NOTE: Self-contained, minimal reproducing code samples are extremely helpful and will expedite addressing your issue]

Open notebook where first cell is stuck on pending
Try to run cell -> Nothing happens
Try to restart kernel -> gets stuck
Try to close and reopen file -> still stuck
Try to quit VSCode and reopen file -> still stuck

Logs

Output for Jupyter in the Output panel (View→Output, change the drop-down the upper-right of the Output panel to Jupyter)

Visual Studio Code (1.83.1, undefined, desktop)
Jupyter Extension Version: 2023.9.1102792234.
Python Extension Version: 2023.18.0.
Platform: darwin (x64).
Multiple Workspace folders opened ~/F1, ~/F2
16:27:16.723 [info] User belongs to experiment group 'NewJupyterSession'
16:27:18.346 [info] Start refreshing Kernel Picker (1697527638346)
16:27:18.350 [info] Not using Pylance
16:27:18.732 [info] Start refreshing Interpreter Kernel Picker
16:27:22.017 [info] Starting Kernel startUsingPythonInterpreter, .jvsc74a57bd0aee8b7b246df8f9039afb4144a1f6fd8d2ca17a180786b69acc140d282b71a49./usr/local/bin/python3./usr/local/bin/python3.-m#ipykernel_launcher  (Python Path: /usr/local/bin/python3, Unknown, 3.11.6) for '~/xxx.ipynb' (disableUI=true)
16:27:24.789 [info] Registering dummy command feature
16:27:28.591 [warn] Failed to get activated env vars for /usr/local/bin/python3 in 10053ms
16:27:28.596 [info] Process Execution: /usr/local/bin/python3 -c "import site;print("USER_BASE_VALUE");print(site.USER_BASE);print("USER_BASE_VALUE");"
16:27:28.673 [warn] Failed to get activated env vars for /usr/local/bin/python3 in 6383ms
16:27:28.822 [info] Process Execution: /usr/local/bin/python3 -m pip list
16:27:28.826 [info] Process Execution: /usr/local/bin/python3 -c "import ipykernel; print(ipykernel.__version__); print("5dc3a68c-e34e-4080-9c3e-2a532b2ccb4d"); print(ipykernel.__file__)"
16:27:28.830 [info] Process Execution: /usr/local/bin/python3 -m ipykernel_launcher --ip=127.0.0.1 --stdin=9003 --control=9001 --hb=9000 --Session.signature_scheme="hmac-sha256" --Session.key=b"1821fd21-0e34-455d-819b-807556cff7e2" --shell=9002 --transport="tcp" --iopub=9004 --f=~/Library/Jupyter/runtime/kernel-v2-7605PWguFGT2ShOw.json
    > cwd: ~/analysis
16:27:31.583 [info] ipykernel version & path 6.20.2, ~/Library/Python/3.11/lib/python/site-packages/ipykernel/__init__.py for /usr/local/bin/python3
16:27:31.584 [info] End refreshing Kernel Picker (1697527638346)
16:27:34.135 [error] Error: Message Decoding: Incorrect;
Obtained "0ce2a2a270976420f883cd5fb1081f8941f9d4685f701006472b0f1d28a47c9b"
Expected "6cb5fc10aacde47c33e7210a8dc53cf6f447c8efa7acc9a4bad7e7dc43a387eb"
    at Object.t.Jx (~/.vscode/extensions/ms-toolsai.jupyter-2023.9.1102792234-darwin-x64/out/extension.node.js:2:315668)
    at WebSocket.onIncomingMessage (~/.vscode/extensions/ms-toolsai.jupyter-2023.9.1102792234-darwin-x64/out/extension.node.js:24:104652)
    at WebSocket.processSocketMessages (~/.vscode/extensions/ms-toolsai.jupyter-2023.9.1102792234-darwin-x64/out/extension.node.js:24:103996)
16:27:35.187 [warn] StdErr from Kernel Process 0.00s - Debugger warning: It seems that frozen modules are being used, which may
0.00s - make the debugger miss breakpoints. Please pass -Xfrozen_modules=off
0.00s - to python to disable frozen modules.
0.00s - Note: Debugging will proceed. Set PYDEVD_DISABLE_FILE_VALIDATION=1 to disable this validation.
16:27:35.796 [warn] StdErr from Kernel Process Traceback (most recent call last):
16:27:35.796 [warn] StdErr from Kernel Process File "<frozen runpy>", line 198, in _run_module_as_main
  File "<frozen runpy>", line 88, in _run_code
  File "~/Library/Python/3.11/lib/python/site-packages/ipykernel_launcher.py", line 17, in <module>
    app.launch_new_instance()
  File "~/Library/Python/3.11/lib/python/site-packages/traitlets/config/application.py", line 1040, in launch_instance
    app.initialize(argv)
  File "~/Library/Python/3.11/lib/python/site-packages/traitlets/config/application.py", line 113, in inner
    return method(app, *args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "~/Library/Python/3.11/lib/python/site-packages/ipykernel/kernelapp.py", line 677, in initialize
    self.init_sockets()
  File "~/Library/Python/3.11/lib/python/site-packages/ipykernel/kernelapp.py", line 316, in init_sockets
    self.shell_port = self._bind_socket(self.shell_socket, self.shell_port)
                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "~/Library/Python/3.11/lib/python/site-packages/ipykernel/kernelapp.py", line 251, in _bind_socket
    return self._try_bind_socket(s, port)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "~/Library/Python/3.11/lib/python/site-packages/ipykernel/kernelapp.py", line 227, in _try_bind_socket
    s.bind("tcp://%s:%i" % (self.ip, port))
16:27:35.797 [warn] StdErr from Kernel Process File "~/Library/Python/3.11/lib/python/site-packages/zmq/sugar/socket.py", line 300, in bind
    super().bind(addr)
  File "zmq/backend/cython/socket.pyx", line 564, in zmq.backend.cython.socket.Socket.bind
  File "zmq/backend/cython/checkrc.pxd", line 28, in zmq.backend.cython.checkrc._check_rc
zmq.error.ZMQError: Address already in use
16:27:36.773 [error] Disposing session as kernel process died ExitCode: 1, Reason: zmq.error.ZMQError
16:27:36.773 [info] Dispose Kernel process 8395.
16:27:36.909 [warn] Didn't get response for requestKernelInfo after 3001ms.
16:27:51.733 [info] Handle Execution of Cells 0 for ~/xx.ipynb
16:30:44.695 [info] Handle Execution of Cells 0 for ~/xx.ipynb
16:34:31.537 [info] Handle Execution of Cells 0 for Untitled-1.ipynb
16:34:31.549 [info] Starting Kernel startUsingPythonInterpreter, .jvsc74a57bd0aee8b7b246df8f9039afb4144a1f6fd8d2ca17a180786b69acc140d282b71a49./usr/local/bin/python3./usr/local/bin/python3.-m#ipykernel_launcher  (Python Path: /usr/local/bin/python3, Unknown, 3.11.6) for 'Untitled-1.ipynb' (disableUI=false)
16:34:31.596 [warn] Failed to get activated env vars for /usr/local/bin/python3 in 43ms
16:34:31.598 [info] Process Execution: /usr/local/bin/python3 -c "import ipykernel; print(ipykernel.__version__); print("5dc3a68c-e34e-4080-9c3e-2a532b2ccb4d"); print(ipykernel.__file__)"
16:34:31.599 [info] Process Execution: /usr/local/bin/python3 -m ipykernel_launcher --ip=127.0.0.1 --stdin=9013 --control=9006 --hb=9005 --Session.signature_scheme="hmac-sha256" --Session.key=b"30e9c416-ad5f-4b3b-a17c-9021e2ed3c56" --shell=9007 --transport="tcp" --iopub=9014 --f=~/Library/Jupyter/runtime/kernel-v2-76058aUlAjY8BjZr.json
    > cwd: ~/F1
16:34:31.611 [warn] Failed to get activated env vars for /usr/local/bin/python3 in 47ms
16:34:31.613 [info] Process Execution: /usr/local/bin/python3 -m pip list
16:34:31.869 [info] ipykernel version & path 6.20.2, ~/Library/Python/3.11/lib/python/site-packages/ipykernel/__init__.py for /usr/local/bin/python3
16:34:32.146 [warn] StdErr from Kernel Process 0.00s - Debugger warning: It seems that frozen modules are being used, which may
0.00s - make the debugger miss breakpoints. Please pass -Xfrozen_modules=off
0.00s - to python to disable frozen modules.
0.00s - Note: Debugging will proceed. Set PYDEVD_DISABLE_FILE_VALIDATION=1 to disable this validation.
16:34:32.509 [info] Process Execution: /usr/local/bin/python3 ~/.vscode/extensions/ms-toolsai.jupyter-2023.9.1102792234-darwin-x64/pythonFiles/printJupyterDataDir.py
16:34:32.519 [info] Kernel acknowledged execution of cell 0 @ 1697528072518
16:34:32.524 [info] End cell 0 execution @ 1697528072524, started @ 1697528072518, elapsed time = 0.006s
16:34:43.530 [info] Handle Execution of Cells 0 for Untitled-1.ipynb
16:34:43.537 [info] Kernel acknowledged execution of cell 0 @ 1697528083537
16:34:43.540 [info] End cell 0 execution @ 1697528083540, started @ 1697528083537, elapsed time = 0.003s
16:35:18.505 [info] Restart requested ~/xx.ipynb
16:36:38.175 [info] Dispose Kernel '~/xx.ipynb' associated with '~/xx.ipynb'
16:36:39.984 [info] Starting Kernel startUsingPythonInterpreter, .jvsc74a57bd0aee8b7b246df8f9039afb4144a1f6fd8d2ca17a180786b69acc140d282b71a49./usr/local/bin/python3./usr/local/bin/python3.-m#ipykernel_launcher  (Python Path: /usr/local/bin/python3, Unknown, 3.11.6) for '~/xx.ipynb' (disableUI=true)
16:36:40.030 [warn] Failed to get activated env vars for /usr/local/bin/python3 in 37ms
16:36:40.033 [info] Process Execution: /usr/local/bin/python3 -c "import ipykernel; print(ipykernel.__version__); print("5dc3a68c-e34e-4080-9c3e-2a532b2ccb4d"); print(ipykernel.__file__)"
16:36:40.037 [info] Process Execution: /usr/local/bin/python3 -m ipykernel_launcher --ip=127.0.0.1 --stdin=9018 --control=9016 --hb=9015 --Session.signature_scheme="hmac-sha256" --Session.key=b"c45de363-ec50-4728-b9d9-d2d1eefeea7c" --shell=9017 --transport="tcp" --iopub=9019 --f=~/Library/Jupyter/runtime/kernel-v2-7605E6xM6CDCMfZX.json
    > cwd: ~/analysis
16:36:40.366 [info] ipykernel version & path 6.20.2, ~/Library/Python/3.11/lib/python/site-packages/ipykernel/__init__.py for /usr/local/bin/python3
16:36:40.790 [warn] StdErr from Kernel Process 0.00s - Debugger warning: It seems that frozen modules are being used, which may
0.00s - make the debugger miss breakpoints. Please pass -Xfrozen_modules=off
0.00s - to python to disable frozen modules.
0.00s - Note: Debugging will proceed. Set PYDEVD_DISABLE_FILE_VALIDATION=1 to disable this validation.
16:39:32.480 [info] Loading webview. View is notset
16:39:32.481 [info] Loading web view...
16:39:32.482 [info] Webview panel created.
16:39:32.759 [info] Web view react rendered
16:41:11.232 [info] Restart requested ~/xx.ipynb
16:41:11.232 [info] Dispose Kernel process 8969.
16:41:11.262 [warn] Failed to get activated env vars for /usr/local/bin/python3 in 24ms
16:41:11.264 [info] Process Execution: /usr/local/bin/python3 -c "import ipykernel; print(ipykernel.__version__); print("5dc3a68c-e34e-4080-9c3e-2a532b2ccb4d"); print(ipykernel.__file__)"
16:41:11.267 [info] Process Execution: /usr/local/bin/python3 -m ipykernel_launcher --ip=127.0.0.1 --stdin=9023 --control=9021 --hb=9020 --Session.signature_scheme="hmac-sha256" --Session.key=b"e71a4625-3193-4124-b99f-8816fda14233" --shell=9022 --transport="tcp" --iopub=9024 --f=~/Library/Jupyter/runtime/kernel-v2-7605ZpbcQNPeUSlm.json
    > cwd: ~/analysis
16:41:11.479 [info] ipykernel version & path 6.20.2, ~/Library/Python/3.11/lib/python/site-packages/ipykernel/__init__.py for /usr/local/bin/python3
16:41:11.763 [warn] StdErr from Kernel Process 0.00s - Debugger warning: It seems that frozen modules are being used, which may
0.00s - make the debugger miss breakpoints. Please pass -Xfrozen_modules=off
0.00s - to python to disable frozen modules.
0.00s - Note: Debugging will proceed. Set PYDEVD_DISABLE_FILE_VALIDATION=1 to disable this validation.

About this issue

Original URL
State: closed
Created 8 months ago
Comments: 58 (27 by maintainers)

Most upvoted comments

Oh yeah my bad. It installed in the local extensions but it didnt on the ssh machine.

I think it is now correct.

New logs:

Show Logs

Visual Studio Code (1.84.2, ssh-remote, desktop)
Jupyter Extension Version: 2023.11.100.
Python Extension Version: 2023.20.0.
Pylance Extension Version: 2023.11.10.
Platform: linux (x64).
Workspace folder /home/barbem4, Home = /home/barbem4
16:05:47.127 [debug] Get Custom Env Variables, Class name = am (started execution), Arg 1: undefined, Arg 2: "RunPythonCode"
16:05:47.130 [info] Start refreshing Kernel Picker (1699999547130)
16:05:47.171 [info] Using Pylance
16:05:47.670 [debug] Preferred Remote kernel for ~/projects/Initial SLE dataset/Linear models SLE/Experiments/Check_files.ipynb is undefined
16:05:48.019 [debug] No controller, hence notebook communications cannot be initialized for editor ~/projects/Initial SLE dataset/Linear models SLE/Experiments/Check_files.ipynb
16:05:48.019 [info] Start refreshing Interpreter Kernel Picker
16:05:49.744 [debug] Get Custom Env Variables, Class name = am, completed in 2617ms, has a truthy return value, Arg 1: undefined, Arg 2: "RunPythonCode"
16:05:49.745 [debug] Jupyter Paths /kernels: 
16:05:49.748 [debug] Kernel Spec Root Paths, /usr/share/jupyter/kernels, /usr/local/share/jupyter/kernels, ~/.local/share/jupyter/kernels
16:05:49.756 [debug] Search for KernelSpecs in Interpreter ~/.conda/envs/praxis_env/bin/python
16:05:49.757 [debug] Finding Global Python KernelSpecs
16:05:49.761 [debug] Search for KernelSpecs in Interpreter /usr/bin/python
16:05:49.762 [debug] Search for KernelSpecs in Interpreter /usr/local/bin/python3
16:05:49.763 [debug] Search for KernelSpecs in Interpreter /opt/miniconda/bin/python
16:05:49.765 [debug] Full interpreter list is length: 4, /usr/bin/python::Unknown:/usr/bin/python, /usr/local/bin/python3::Unknown:/usr/local/bin/python3, ~/.conda/envs/praxis_env/bin/python:praxis_env:Conda:~/.conda/envs/praxis_env/bin/python, /opt/miniconda/bin/python:base:Conda:/opt/miniconda/bin/python
16:05:49.769 [debug] Getting activated env variables, Class name = nd (started execution), Arg 1: "~", Arg 2: "~/.conda/envs/praxis_env/bin/python", Arg 3: undefined
16:05:49.769 [debug] Get Custom Env Variables, Class name = am (started execution), Arg 1: "~", Arg 2: "RunPythonCode"
16:05:49.770 [debug] Get Custom Env Variables, Class name = am, completed in 1ms, has a truthy return value, Arg 1: "~", Arg 2: "RunPythonCode"
16:05:50.026 [debug] Kernels for interpreter /usr/bin/python are .jvsc74a57bd0767d51c1340bd893661ea55ea3124f6de3c7a262a8b4abca0554b478b1e2ff90./usr/bin/python./usr/bin/python.-m#ipykernel_launcher
16:05:50.028 [debug] Kernels for interpreter /usr/local/bin/python3 are .jvsc74a57bd0aee8b7b246df8f9039afb4144a1f6fd8d2ca17a180786b69acc140d282b71a49./usr/local/bin/python3./usr/local/bin/python3.-m#ipykernel_launcher
16:05:50.029 [debug] Kernels for interpreter /opt/miniconda/bin/python are .jvsc74a57bd04c2b8563932708ac4f64e3bc4797ea8eb43fc7530baa7f01daadf5b46d7b1fd4./opt/miniconda/python./opt/miniconda/python.-m#ipykernel_launcher
16:05:50.039 [debug] Loading kernelspec from ~/.local/share/jupyter/kernels/python3/kernel.json 
16:05:50.044 [debug] Loading kernelspec from ~/.conda/envs/praxis_env/share/jupyter/kernels/python3/kernel.json for ~/.conda/envs/praxis_env/bin/python
16:05:50.075 [debug] Kernel Specs found in interpreter ~/.conda/envs/praxis_env/bin/python are [{"specFile":"~/.conda/envs/praxis_env/share/jupyter/kernels/python3/kernel.json","interpreterPath":"~/.conda/envs/praxis_env/bin/python","isRegisteredByVSC":"registeredByNewVersionOfExt","name":"pythonjvsc74a57bd0af59e808e2bb2d49f2aad3fcaa4e3b4707b54f609965d9d8e3585c2a4131334f","argv":["python","-m","ipykernel_launcher","-f","{connection_file}"],"language":"python","executable":"python","display_name":"Python 3 (ipykernel)","metadata":{"debugger":true,"vscode":{"originalSpecFile":"~/.conda/envs/praxis_env/share/jupyter/kernels/python3/kernel.json","originalDisplayName":"Python 3 (ipykernel)"}}}]
16:05:50.075 [debug] Hiding default kernel spec 'Python 3 (ipykernel)', 'pythonjvsc74a57bd0af59e808e2bb2d49f2aad3fcaa4e3b4707b54f609965d9d8e3585c2a4131334f', /python for interpreter ~/.conda/envs/praxis_env/bin/python and spec ~/.conda/envs/praxis_env/share/jupyter/kernels/python3/kernel.json
16:05:50.075 [debug] Kernels for interpreter ~/.conda/envs/praxis_env/bin/python are .jvsc74a57bd0af59e808e2bb2d49f2aad3fcaa4e3b4707b54f609965d9d8e3585c2a4131334f.~/.conda/envs/praxis_env/python.~/.conda/envs/praxis_env/python.-m#ipykernel_launcher
16:05:50.853 [debug] KernelProvider switched kernel to id = .jvsc74a57bd0af59e808e2bb2d49f2aad3fcaa4e3b4707b54f609965d9d8e3585c2a4131334f.~/.conda/envs/praxis_env/python.~/.conda/envs/praxis_env/python.-m#ipykernel_launcher
16:05:50.854 [debug] start the kernel, options.disableUI=true for ~/projects/Initial SLE dataset/Linear models SLE/Experiments/Check_files.ipynb
16:05:50.858 [debug] Initialize notebook communications for editor ~/projects/Initial SLE dataset/Linear models SLE/Experiments/Check_files.ipynb
16:05:50.858 [debug] Resolving notebook UI Comms (resolve) for ~/projects/Initial SLE dataset/Linear models SLE/Experiments/Check_files.ipynb
16:05:50.858 [debug] initialize CommonMessageCoordinator
16:05:50.904 [debug] Registering commtarget jupyter.widget
16:05:50.904 [debug] IPyWidgetMessageDispatcher.initialize
16:05:50.905 [debug] Attempting to determine version of IPyWidgets
16:05:50.906 [debug] Controller selection change completed
16:05:50.906 [debug] Waiting for IPyWidgets version
16:05:50.906 [debug] Waiting for IPyWidgets version promise
16:05:50.913 [info] Starting Kernel startUsingPythonInterpreter, .jvsc74a57bd0af59e808e2bb2d49f2aad3fcaa4e3b4707b54f609965d9d8e3585c2a4131334f.~/.conda/envs/praxis_env/python.~/.conda/envs/praxis_env/python.-m#ipykernel_launcher  (Python Path: ~/.conda/envs/praxis_env/bin/python, Conda, praxis_env, 3.9.18) for '~/projects/Initial SLE dataset/Linear models SLE/Experiments/Check_files.ipynb' (disableUI=true)
16:05:50.914 [debug] Creating raw notebook for resource '~/projects/Initial SLE dataset/Linear models SLE/Experiments/Check_files.ipynb'
16:05:50.978 [debug] Getting activated env variables, Class name = nd (started execution), Arg 1: "~/projects/Initial SLE dataset/Linear models SLE/Experiments/Check_files.ipynb", Arg 2: "~/.conda/envs/praxis_env/bin/python", Arg 3: undefined
16:05:50.978 [debug] Get Custom Env Variables, Class name = am (started execution), Arg 1: "~/projects/Initial SLE dataset/Linear models SLE/Experiments/Check_files.ipynb", Arg 2: "RunPythonCode"
16:05:50.979 [debug] Get Custom Env Variables, Class name = am, completed in 1ms, has a truthy return value, Arg 1: "~/projects/Initial SLE dataset/Linear models SLE/Experiments/Check_files.ipynb", Arg 2: "RunPythonCode"
16:05:51.215 [debug] Launching kernel .jvsc74a57bd0af59e808e2bb2d49f2aad3fcaa4e3b4707b54f609965d9d8e3585c2a4131334f.~/.conda/envs/praxis_env/python.~/.conda/envs/praxis_env/python.-m#ipykernel_launcher for ~/projects/Initial SLE dataset/Linear models SLE/Experiments/Check_files.ipynb in ~/projects/Initial SLE dataset/Linear models SLE/Experiments with ports 9011, 9010, 9014, 9012, 9013
16:05:51.332 [debug] Python API env change detected, add => '/bin/python'
16:05:52.099 [debug] Conda file returned by Python Extension is conda
16:05:52.153 [debug] Python API env change detected, add => '/bin/python3.6'
16:05:52.202 [debug] Python API env change detected, update => '/bin/python'
16:05:52.264 [debug] Python API env change detected, update => '/bin/python3.6'
16:05:52.287 [debug] Python API env change detected, update => '/bin/python'
16:05:52.292 [debug] Search for KernelSpecs in Interpreter /bin/python
16:05:52.293 [debug] Finding Global Python KernelSpecs
16:05:52.300 [debug] Kernels for interpreter /bin/python are .jvsc74a57bd0e7370f93d1d0cde622a1f8e1c04877d8463912d04d973331ad4851f04de6915a./bin/python./bin/python.-m#ipykernel_launcher
16:05:52.347 [debug] Python API env change detected, update => '/bin/python3.6'
16:05:52.352 [debug] Search for KernelSpecs in Interpreter /bin/python3.6
16:05:52.354 [debug] Full interpreter list is length: 6, /usr/bin/python::Unknown:/usr/bin/python, /usr/local/bin/python3::Unknown:/usr/local/bin/python3, ~/.conda/envs/praxis_env/bin/python:praxis_env:Conda:~/.conda/envs/praxis_env/bin/python, /opt/miniconda/bin/python:base:Conda:/opt/miniconda/bin/python, /bin/python::Unknown:/bin/python, /bin/python3.6::Unknown:/bin/python3.6
16:05:52.389 [debug] Kernels for interpreter /bin/python3.6 are .jvsc74a57bd0db0f6cbdde3eb805f0a229b988d6bd72d452c42e640dd9958b4355934ec01bf5./bin/python3.6./bin/python3.6.-m#ipykernel_launcher
16:05:52.483 [debug] Python API env change detected, add => '/usr/bin/python3.6'
16:05:52.579 [debug] Python API env change detected, update => '/usr/bin/python3.6'
16:05:52.681 [debug] Python API env change detected, update => '/usr/bin/python3.6'
16:05:52.687 [debug] Search for KernelSpecs in Interpreter /usr/bin/python3.6
16:05:52.690 [debug] Full interpreter list is length: 7, /usr/bin/python::Unknown:/usr/bin/python, /usr/local/bin/python3::Unknown:/usr/local/bin/python3, ~/.conda/envs/praxis_env/bin/python:praxis_env:Conda:~/.conda/envs/praxis_env/bin/python, /opt/miniconda/bin/python:base:Conda:/opt/miniconda/bin/python, /bin/python::Unknown:/bin/python, /bin/python3.6::Unknown:/bin/python3.6, /usr/bin/python3.6::Unknown:/usr/bin/python3.6
16:05:52.697 [debug] Kernels for interpreter /usr/bin/python3.6 are .jvsc74a57bd030295c5bec572e859485b1ffa5e89b8b3e2022ef6e3e739c1ac40f143a557caf./usr/bin/python3.6./usr/bin/python3.6.-m#ipykernel_launcher
16:05:52.831 [debug] Python API env change detected, update => '/usr/bin/python3.6m'
16:05:52.903 [debug] Python API env change detected, update => '/usr/bin/python3.6m'
16:05:52.913 [debug] Search for KernelSpecs in Interpreter /usr/bin/python3.6m
16:05:52.916 [debug] Full interpreter list is length: 7, /usr/bin/python::Unknown:/usr/bin/python, /usr/local/bin/python3::Unknown:/usr/local/bin/python3, ~/.conda/envs/praxis_env/bin/python:praxis_env:Conda:~/.conda/envs/praxis_env/bin/python, /opt/miniconda/bin/python:base:Conda:/opt/miniconda/bin/python, /bin/python::Unknown:/bin/python, /bin/python3.6::Unknown:/bin/python3.6, /usr/bin/python3.6m::Unknown:/usr/bin/python3.6m
16:05:52.949 [debug] Kernels for interpreter /usr/bin/python3.6m are .jvsc74a57bd0fdb70176b9f68a63fad060439e1eecc9dfd60edecc2378a4464637b9f14b2c93./usr/bin/python3.6m./usr/bin/python3.6m.-m#ipykernel_launcher
16:05:53.090 [debug] Python API env change detected, add => '~/sandbox/bin/python'
16:05:53.185 [debug] Got env vars with python ~/.conda/envs/praxis_env/bin/python, with env var count 51 in 3416ms. 
    PATH value is ~/.vscode-server/bin/1a5daa3a0231a0fbba4f14db7ec463cf99d7768e/bin/remote-cli:~/.conda/envs/bin:/opt/python-3.9.12/bin:~/local/bin:~/.vscode-server/bin/b3e4e68a0bc097f0ae7907b217c1119af9e03435/bin/remote-cli:~/.conda/envs/bin:/opt/python-3.9.12/bin:/opt/python-3.9.12/bin:~/.conda/envs/bin:~/.conda/envs/praxis_env/bin:/opt/miniconda/condabin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/local/nz/bin:/usr/local/nz/bin64:/usr/local/texlive/2022/bin/x86_64-linux:/usr/local/nz/bin:/usr/local/nz/bin64:~/.fzf/bin and 
    Path value is undefined
16:05:53.185 [debug] Prepend PATH with python bin for ~/.conda/envs/praxis_env/bin/python
16:05:53.185 [debug] Activated Env Variables for ~/.conda/envs/praxis_env/bin/python, 
    PATH value is ~/.conda/envs/praxis_env/bin:~/.vscode-server/bin/1a5daa3a0231a0fbba4f14db7ec463cf99d7768e/bin/remote-cli:~/.conda/envs/bin:/opt/python-3.9.12/bin:~/local/bin:~/.vscode-server/bin/b3e4e68a0bc097f0ae7907b217c1119af9e03435/bin/remote-cli:~/.conda/envs/bin:/opt/python-3.9.12/bin:/opt/python-3.9.12/bin:~/.conda/envs/bin:~/.conda/envs/praxis_env/bin:/opt/miniconda/condabin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/local/nz/bin:/usr/local/nz/bin64:/usr/local/texlive/2022/bin/x86_64-linux:/usr/local/nz/bin:/usr/local/nz/bin64:~/.fzf/bin and 
    Path value is undefined
16:05:53.186 [debug] Getting activated env variables, Class name = nd, completed in 3416ms, has a truthy return value, Arg 1: "~", Arg 2: "~/.conda/envs/praxis_env/bin/python", Arg 3: undefined
16:05:53.219 [info] Process Execution: ~/.conda/envs/praxis_env/bin/python -m pip list
16:05:53.223 [debug] Got env vars with python ~/.conda/envs/praxis_env/bin/python, with env var count 51 in 2245ms. 
    PATH value is ~/.vscode-server/bin/1a5daa3a0231a0fbba4f14db7ec463cf99d7768e/bin/remote-cli:~/.conda/envs/bin:/opt/python-3.9.12/bin:~/local/bin:~/.vscode-server/bin/b3e4e68a0bc097f0ae7907b217c1119af9e03435/bin/remote-cli:~/.conda/envs/bin:/opt/python-3.9.12/bin:/opt/python-3.9.12/bin:~/.conda/envs/bin:~/.conda/envs/praxis_env/bin:/opt/miniconda/condabin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/local/nz/bin:/usr/local/nz/bin64:/usr/local/texlive/2022/bin/x86_64-linux:/usr/local/nz/bin:/usr/local/nz/bin64:~/.fzf/bin and 
    Path value is undefined
16:05:53.223 [debug] Prepend PATH with python bin for ~/.conda/envs/praxis_env/bin/python
16:05:53.223 [debug] Activated Env Variables for ~/.conda/envs/praxis_env/bin/python, 
    PATH value is ~/.conda/envs/praxis_env/bin:~/.vscode-server/bin/1a5daa3a0231a0fbba4f14db7ec463cf99d7768e/bin/remote-cli:~/.conda/envs/bin:/opt/python-3.9.12/bin:~/local/bin:~/.vscode-server/bin/b3e4e68a0bc097f0ae7907b217c1119af9e03435/bin/remote-cli:~/.conda/envs/bin:/opt/python-3.9.12/bin:/opt/python-3.9.12/bin:~/.conda/envs/bin:~/.conda/envs/praxis_env/bin:/opt/miniconda/condabin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/local/nz/bin:/usr/local/nz/bin64:/usr/local/texlive/2022/bin/x86_64-linux:/usr/local/nz/bin:/usr/local/nz/bin64:~/.fzf/bin and 
    Path value is undefined
16:05:53.223 [debug] Getting activated env variables, Class name = nd, completed in 2245ms, has a truthy return value, Arg 1: "~/projects/Initial SLE dataset/Linear models SLE/Experiments/Check_files.ipynb", Arg 2: "~/.conda/envs/praxis_env/bin/python", Arg 3: undefined
16:05:53.244 [info] Process Execution: ~/.conda/envs/praxis_env/bin/python -c "import ipykernel; print(ipykernel.__version__); print("5dc3a68c-e34e-4080-9c3e-2a532b2ccb4d"); print(ipykernel.__file__)"
16:05:53.244 [debug] Kernel Env Variables for ~/.vscode-server/extensions/ms-toolsai.jupyter-2023.11.100/temp/jupyter/kernels/pythonjvsc74a57bd0af59e808e2bb2d49f2aad3fcaa4e3b4707b54f609965d9d8e3585c2a4131334f/kernel.json, PATH value is ~/.conda/envs/praxis_env/bin:~/.vscode-server/bin/1a5daa3a0231a0fbba4f14db7ec463cf99d7768e/bin/remote-cli:~/.conda/envs/bin:/opt/python-3.9.12/bin:~/local/bin:~/.vscode-server/bin/b3e4e68a0bc097f0ae7907b217c1119af9e03435/bin/remote-cli:~/.conda/envs/bin:/opt/python-3.9.12/bin:/opt/python-3.9.12/bin:~/.conda/envs/bin:~/.conda/envs/praxis_env/bin:/opt/miniconda/condabin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/local/nz/bin:/usr/local/nz/bin64:/usr/local/texlive/2022/bin/x86_64-linux:/usr/local/nz/bin:/usr/local/nz/bin64:~/.fzf/bin
16:05:53.270 [info] Process Execution: ~/.conda/envs/praxis_env/bin/python -m ipykernel_launcher --f=~/.local/share/jupyter/runtime/kernel-v2-41096mVL7SQryeeGd.json
    > cwd: ~/projects/Initial SLE dataset/Linear models SLE/Experiments
16:05:53.291 [debug] Python API env change detected, update => '~/sandbox/bin/python'
16:05:53.524 [debug] Python API env change detected, update => '~/sandbox/bin/python'
16:05:53.531 [debug] Search for KernelSpecs in Interpreter ~/sandbox/bin/python
16:05:53.534 [debug] Full interpreter list is length: 8, /usr/bin/python::Unknown:/usr/bin/python, /usr/local/bin/python3::Unknown:/usr/local/bin/python3, ~/.conda/envs/praxis_env/bin/python:praxis_env:Conda:~/.conda/envs/praxis_env/bin/python, /opt/miniconda/bin/python:base:Conda:/opt/miniconda/bin/python, /bin/python::Unknown:/bin/python, /bin/python3.6::Unknown:/bin/python3.6, /usr/bin/python3.6m::Unknown:/usr/bin/python3.6m, ~/sandbox/bin/python:sandbox:Venv:~/sandbox/bin/python
16:05:53.553 [debug] Loading kernelspec from ~/sandbox/share/jupyter/kernels/python3/kernel.json for ~/sandbox/bin/python
16:05:53.556 [debug] Kernel Specs found in interpreter ~/sandbox/bin/python are [{"specFile":"~/sandbox/share/jupyter/kernels/python3/kernel.json","interpreterPath":"~/sandbox/bin/python","isRegisteredByVSC":"registeredByNewVersionOfExt","name":"pythonjvsc74a57bd0b0e92fd24cd1235dca8a7d32022db8bc6b9211cbdc26753cfb27ff825bde661f","argv":["python","-m","ipykernel_launcher","-f","{connection_file}"],"language":"python","executable":"python","display_name":"Python 3 (ipykernel)","metadata":{"debugger":true,"vscode":{"originalSpecFile":"~/sandbox/share/jupyter/kernels/python3/kernel.json","originalDisplayName":"Python 3 (ipykernel)"}}}]
16:05:53.557 [debug] Hiding default kernel spec 'Python 3 (ipykernel)', 'pythonjvsc74a57bd0b0e92fd24cd1235dca8a7d32022db8bc6b9211cbdc26753cfb27ff825bde661f', /python for interpreter ~/sandbox/bin/python and spec ~/sandbox/share/jupyter/kernels/python3/kernel.json
16:05:53.557 [debug] Kernels for interpreter ~/sandbox/bin/python are .jvsc74a57bd0b0e92fd24cd1235dca8a7d32022db8bc6b9211cbdc26753cfb27ff825bde661f.~/sandbox/python.~/sandbox/python.-m#ipykernel_launcher
16:05:53.566 [debug] Python API env change detected, update => '~/.conda/envs/praxis_env/bin/python'
16:05:53.576 [debug] Python API env change detected, update => '/bin/python'
16:05:53.585 [debug] Python API env change detected, update => '/bin/python3.6'
16:05:53.594 [debug] Python API env change detected, update => '/usr/bin/python'
16:05:53.606 [debug] Python API env change detected, update => '/usr/bin/python3.6m'
16:05:53.627 [debug] Full interpreter list is length: 8, /usr/bin/python::Unknown:/usr/bin/python, /usr/local/bin/python3::Unknown:/usr/local/bin/python3, ~/.conda/envs/praxis_env/bin/python:praxis_env:Conda:~/.conda/envs/praxis_env/bin/python, /opt/miniconda/bin/python:base:Conda:/opt/miniconda/bin/python, /bin/python::Unknown:/bin/python, /bin/python3.6::Unknown:/bin/python3.6, /usr/bin/python3.6m::Unknown:/usr/bin/python3.6m, ~/sandbox/bin/python:sandbox:Venv:~/sandbox/bin/python
16:05:53.627 [debug] Refreshed Environments
16:05:53.899 [debug] ipykernel version & path 6.26.0, ~/.conda/envs/praxis_env/lib/python3.9/site-packages/ipykernel/__init__.py for ~/.conda/envs/praxis_env/bin/python
16:05:54.360 [info] Handle Execution of Cells 0 for ~/projects/Initial SLE dataset/Linear models SLE/Experiments/Check_files.ipynb
16:05:55.223 [debug] Kernel output: NOTE: When using the `ipython kernel` entry point, Ctrl-C will not work.

To exit, you will have to explicitly quit this process, by either sending
"quit" from a client, or using Ctrl-\ in UNIX-like environments.

To read more about this, see https://github.com/ipython/ipython/issues/2049


To connect another client to this kernel, use:
    --existing kernel-v2-41096mVL7SQryeeGd.json

16:05:55.403 [debug] Outgoing Socket Message: {"buffers":[],"channel":"shell","content":{},"header":{"date":"2023-11-14T22:05:55.402Z","msg_id":"4cee4e45-693f-4f7f-bd2d-0dbc726f0388","msg_type":"kernel_info_request","session":"1b6046d3-4697-4e4d-9aef-e68a97444077","username":"527017e7-9977-45cb-ac49-f47ac966ae54","version":"5.2"},"metadata":{},"parent_header":{}}
16:05:55.404 [debug] Waiting for Raw Session to be ready in postStartRawSession
16:05:55.404 [debug] Waiting for Raw session to be ready, status: connected
16:05:55.405 [debug] Raw session connected
16:05:55.405 [debug] Waiting for Raw session to be ready
16:05:55.406 [debug] Waited for Raw session to be ready & got status: connected
16:05:55.406 [debug] Successfully waited for Raw Session to be ready in postStartRawSession
16:05:55.406 [debug] Kernel status is 'unknown' before requesting kernel info and after ready
16:05:55.406 [debug] Sending request for kernelInfo
16:05:55.406 [debug] Outgoing Socket Message: {"buffers":[],"channel":"shell","content":{},"header":{"date":"2023-11-14T22:05:55.406Z","msg_id":"244d213f-0518-4169-9041-72cff258f18d","msg_type":"kernel_info_request","session":"1b6046d3-4697-4e4d-9aef-e68a97444077","username":"527017e7-9977-45cb-ac49-f47ac966ae54","version":"5.2"},"metadata":{},"parent_header":{}}
16:05:56.906 [debug] Did not get a response for requestKernelInfo
16:05:56.906 [debug] Sending request for kernelInfo
16:05:56.907 [debug] Outgoing Socket Message: {"buffers":[],"channel":"shell","content":{},"header":{"date":"2023-11-14T22:05:56.906Z","msg_id":"5cb3c458-f983-45f5-82a8-0a0cc6d4f31c","msg_type":"kernel_info_request","session":"1b6046d3-4697-4e4d-9aef-e68a97444077","username":"527017e7-9977-45cb-ac49-f47ac966ae54","version":"5.2"},"metadata":{},"parent_header":{}}
16:05:58.408 [debug] Did not get a response for requestKernelInfo
16:05:58.408 [warn] Didn't get response for requestKernelInfo after 3002ms.
16:05:58.415 [debug] Executing silently Code (unknown) = import sys as _VSCODE_sys\nprint(_VSCODE_sys.executable); del _VSCODE_sys
16:05:58.415 [debug] Outgoing Socket Message: {"buffers":[],"channel":"shell","content":{"silent":false,"store_history":false,"user_expressions":{},"allow_stdin":true,"stop_on_error":false,"code":"import sys as _VSCODE_sys\nprint(_VSCODE_sys.executable); del _VSCODE_sys"},"header":{"date":"2023-11-14T22:05:58.415Z","msg_id":"6bc37b23-89d2-4153-8cd2-5bb12f5c4f0a","msg_type":"execute_request","session":"1b6046d3-4697-4e4d-9aef-e68a97444077","username":"527017e7-9977-45cb-ac49-f47ac966ae54","version":"5.2"},"metadata":{},"parent_header":{}}
16:06:07.629 [info] End refreshing Kernel Picker (1699999547130)

marcoBmota8 on Nov 14, 2023

Ok, I found out for v2023.11.1003200515 just a ‘Reload Window’ is enough to make the notebook run.

rednag on Nov 14, 2023

Sorry for those running into this issues Pleatsecan you followe the comments in this link anddownload this extension and try https://github.com/microsoft/vscode-jupyter/issues/14519#issuecomment-1778289425

DonJayamanne on Nov 14, 2023

I am out of office for the next few weeks so I won’t be able to try this fix for a while, sorry @DonJayamanne !

NickCrews on Oct 27, 2023