atlas: No such command 'init'.

init commands fails

atlas init
Usage: atlas [OPTIONS] COMMAND [ARGS]...
Try 'atlas -h' for help.

Error: No such command 'init'.

About this issue

Original URL
State: closed
Created 3 years ago
Comments: 18 (10 by maintainers)

Most upvoted comments

yes, so far … so good! I just fear that there are other packages in the. .local/lib/python3.6 which are loaded in priority.

SilasK on Jan 11, 2021

Thanks for the tip @SilasK , rm -rf /home/animeshs/.local/lib/python3.6/site-packages/atlas/ seems to have magically invoked atlas init but to run all, had to specify --cores argument though?

[2021-01-11 14:15 INFO] Executing: snakemake --snakefile /home/animeshs/anaconda3/envs/py36/lib/python3.6/site-packages/atlas/Snakefile --directory /mnt/z/ayu  --rerun-incomplete --configfile '/mnt/z/ayu/config.yaml' --nolock   --use-conda --conda-prefix /mnt/z/ayu/databases/conda_envs   all  --cores 12
Building DAG of jobs...
Creating conda environment /home/animeshs/anaconda3/envs/py36/lib/python3.6/site-packages/atlas/rules/../envs/DASTool.yaml...
Downloading and installing remote packages.

```so far ... so good?

animesh on Jan 11, 2021

Ok, No I think you got atlas v2.4.5 correctly installed.

SilasK on Jan 11, 2021