xESMF: Kernel dies running tutorial example
I am running the tutorial at https://xesmf.readthedocs.io/en/latest/Curvilinear_grid.html and the kernel dies. I updated all packages and still have issues. Does anybody have any idea where the incompatibility is coming from? here is the environment I am running in:
name: pangeo
channels:
- conda-forge
- defaults
dependencies:
- asn1crypto=0.24.0=py36_3
- bleach=2.1.3=py_0
- bokeh=0.13.0=py36_0
- bottleneck=1.2.1=py36h7eb728f_1
- cffi=1.11.5=py36h5e8e0c9_1
- cftime=1.0.1=py36h7eb728f_0
- chardet=3.0.4=py36_3
- click=6.7=py_1
- cloudpickle=0.5.2=py_0
- cryptography=2.3.1=py36hdffb7b8_0
- cryptography-vectors=2.3.1=py36_0
- curl=7.59.0=0
- cycler=0.10.0=py36_0
- cytoolz=0.9.0.1=py36_0
- dask=0.17.1=py_2
- dask-core=0.17.1=py_0
- dask-jobqueue=0.1.1=py_0
- decorator=4.2.1=py36_0
- distributed=1.21.3=py36_0
- docrep=0.2.3=py36_0
- entrypoints=0.2.3=py36_1
- esmf=7.1.0r=1
- esmpy=7.1.0r=py36_1
- expat=2.2.5=0
- fontconfig=2.13.1=h65d0f4c_0
- freetype=2.9.1=h6debe1e_4
- geos=3.6.2=hfc679d8_3
- gettext=0.19.8.1=0
- gmp=6.1.2=0
- h5netcdf=0.6.2=py_0
- h5py=2.8.0=py36h470a237_0
- hdf4=4.2.13=0
- hdf5=1.10.1=2
- heapdict=1.0.0=py36_0
- html5lib=1.0.1=py_0
- icu=58.2=0
- idna=2.7=py36_2
- ipykernel=4.8.2=py36_0
- ipython=6.2.1=py36_1
- ipython_genutils=0.2.0=py36_0
- jedi=0.11.1=py36_0
- jinja2=2.10=py36_0
- jpeg=9c=h470a237_1
- jsonschema=2.6.0=py36_1
- jupyter_client=5.2.3=py36_0
- jupyter_core=4.4.0=py_0
- jupyterlab=0.31.12=py36_1
- jupyterlab_launcher=0.10.5=py36_0
- kiwisolver=1.0.1=py36_1
- krb5=1.14.2=0
- libedit=3.1.20170329=0
- libffi=3.2.1=3
- libiconv=1.15=0
- libnetcdf=4.5.0=3
- libpng=1.6.34=0
- libsodium=1.0.15=1
- libssh2=1.8.0=2
- libtiff=4.0.9=he6b73bb_1
- libuuid=2.32.1=h470a237_2
- libxcb=1.13=0
- libxml2=2.9.8=0
- libxslt=1.1.32=h88dbc4e_2
- locket=0.2.0=py36_1
- lxml=4.2.4=py36hc9114bc_0
- markupsafe=1.0=py36_0
- mistune=0.8.3=py_0
- mpi=1.0=mpich
- mpi4py=3.0.0=py36_0
- mpich=3.2.1=0
- msgpack-python=0.5.5=py36_0
- nbconvert=5.3.1=py_1
- nbformat=4.4.0=py36_0
- nbserverproxy=0.8.3=py36_0
- ncurses=5.9=10
- netcdf-fortran=4.4.4=7
- netcdf4=1.4.0=py36_0
- notebook=5.4.1=py36_0
- olefile=0.45.1=py_1
- openblas=0.2.20=8
- owslib=0.16.0=py_1
- packaging=17.1=py_0
- pandas=0.23.4=py36hf8a1672_0
- pandoc=2.1.3=0
- pandocfilters=1.4.1=py36_0
- parso=0.1.1=py_0
- partd=0.3.8=py36_0
- pexpect=4.4.0=py36_0
- pickleshare=0.7.4=py36_0
- pillow=5.2.0=py36hc736899_1
- pip=9.0.2=py36_0
- proj4=4.9.3=h470a237_8
- prompt_toolkit=1.0.15=py36_0
- psutil=5.4.3=py36_0
- ptyprocess=0.5.2=py36_0
- pycparser=2.18=py_1
- pyepsg=0.3.2=py_1
- pygments=2.2.0=py36_0
- pyopenssl=18.0.0=py36_0
- pyparsing=2.2.0=py36_0
- pyproj=1.9.5.1=py36h508ed2a_3
- pyshp=1.2.12=py_0
- pysocks=1.6.8=py36_2
- python-dateutil=2.7.0=py_0
- pytz=2018.3=py_0
- pyyaml=3.12=py36_1
- pyzmq=17.0.0=py36_3
- readline=7.0=0
- requests=2.19.1=py36_1
- send2trash=1.5.0=py_0
- setuptools=39.0.1=py36_0
- shapely=1.6.4=py36h164cb2d_1
- simplegeneric=0.8.1=py36_0
- six=1.11.0=py36_1
- sortedcontainers=1.5.9=py36_0
- tblib=1.3.2=py36_0
- terminado=0.8.1=py36_0
- testpath=0.3.1=py36_0
- tk=8.6.8=ha92aebf_0
- toolz=0.9.0=py_0
- tornado=5.0.1=py36_1
- traitlets=4.3.2=py36_0
- urllib3=1.23=py36_1
- wcwidth=0.1.7=py36_0
- webencodings=0.5=py36_0
- wheel=0.30.0=py36_2
- xarray=0.10.8=py36_0
- xorg-libxau=1.0.8=3
- xorg-libxdmcp=1.1.2=3
- xz=5.2.4=h470a237_1
- yaml=0.1.7=0
- zeromq=4.2.3=2
- zict=0.1.3=py_0
- zlib=1.2.11=0
- blas=1.0=mkl
- ca-certificates=2018.03.07=0
- cartopy=0.16.0=py36hf32a85a_0
- certifi=2018.8.24=py36_1
- dbus=1.13.2=h714fa37_1
- glib=2.56.1=h000015b_0
- gst-plugins-base=1.14.0=hbbd80ab_1
- gstreamer=1.14.0=hb453b48_1
- intel-openmp=2018.0.0=hc7b2577_8
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=7.2.0=hdf63c60_3
- libgfortran=3.0.0=1
- libgfortran-ng=7.2.0=hdf63c60_3
- libopenblas=0.2.20=h9ac9557_7
- libstdcxx-ng=7.2.0=hdf63c60_3
- matplotlib=2.2.3=py36hb69df0a_0
- mkl=2019.0=117
- mkl_fft=1.0.4=py36h4414c95_1
- mkl_random=1.0.1=py36h4414c95_1
- numpy=1.15.0=py36h1b885b7_0
- numpy-base=1.15.0=py36h3dfced4_0
- openssl=1.0.2p=h14c3975_0
- pcre=8.42=h439df22_0
- pyqt=5.9.2=py36h22d08a2_0
- python=3.6.3=h1284df2_4
- qt=5.9.6=h52aff34_0
- scikit-learn=0.19.1=py36h7aa7ec6_0
- scipy=1.1.0=py36hc49cb51_0
- sip=4.19.8=py36hf484d3e_0
- sqlite=3.24.0=h84994c4_0
prefix: /glade/u/home/gloege/miniconda3/envs/pangeo
pip packages
Package Version
-------------------- -----------
asn1crypto 0.24.0
bleach 2.1.3
bokeh 0.13.0
Bottleneck 1.2.1
Cartopy 0.16.0
certifi 2018.8.24
cffi 1.11.5
cftime 1.0.1
chardet 3.0.4
click 6.7
cloudpickle 0.5.2
cryptography 2.3.1
cryptography-vectors 2.3.1
cycler 0.10.0
Cython 0.28.3
cytoolz 0.9.0.1
dask 0.17.1
dask-jobqueue 0.1.1
decorator 4.2.1
distributed 1.21.3
docrep 0.2.3
entrypoints 0.2.3
ESMPy 7.1.0.dev0
h5netcdf 0.6.2
h5py 2.8.0
heapdict 1.0.0
html5lib 1.0.1
idna 2.7
ipykernel 4.8.2
ipython 6.2.1
ipython-genutils 0.2.0
jedi 0.11.1
Jinja2 2.10
jsonschema 2.6.0
jupyter-client 5.2.3
jupyter-core 4.4.0
jupyterlab 0.31.12
jupyterlab-launcher 0.10.5
kiwisolver 1.0.1
locket 0.2.0
lxml 4.2.4
MarkupSafe 1.0
matplotlib 2.2.3
mistune 0.8.3
mkl-fft 1.0.4
mkl-random 1.0.1
mpi4py 3.0.0
msgpack-python 0.5.5
nbconvert 5.3.1
nbformat 4.4.0
nbserverproxy 0.8.3
netCDF4 1.4.0
notebook 5.4.1
numpy 1.15.0
olefile 0.45.1
OWSLib 0.16.0
packaging 17.1
pandas 0.23.4
pandocfilters 1.4.1
parso 0.1.1
partd 0.3.8
pexpect 4.4.0
pickleshare 0.7.4
Pillow 5.2.0
pip 18.0
prompt-toolkit 1.0.15
psutil 5.4.3
ptyprocess 0.5.2
pycparser 2.18
pyepsg 0.3.2
Pygments 2.2.0
pyOpenSSL 18.0.0
pyparsing 2.2.0
pyproj 1.9.5.1
pyshp 1.2.12
PySocks 1.6.8
python-dateutil 2.7.0
pytz 2018.3
PyYAML 3.12
pyzmq 17.0.0
requests 2.19.1
scikit-learn 0.19.1
scipy 1.1.0
Send2Trash 1.5.0
setuptools 39.0.1
Shapely 1.6.4.post1
simplegeneric 0.8.1
six 1.11.0
sortedcontainers 1.5.9
tblib 1.3.2
terminado 0.8.1
testpath 0.3.1
toolz 0.9.0
tornado 5.0.1
traitlets 4.3.2
urllib3 1.23
wcwidth 0.1.7
webencodings 0.5
wheel 0.30.0
xarray 0.10.8
xesmf 0.1.1
zict 0.1.3
About this issue
- Original URL
- State: open
- Created 6 years ago
- Comments: 22 (9 by maintainers)
Commits related to this issue
- Merge pull request #35 from ocefpaf/fix_tarball Fix tarball — committed to Ouranosinc/xESMF by huard 4 years ago
@lgloege update, this works: