jabref: Proxy preferences do not work for HTTPS sites

Version information

JabRef version JabRef 3.7-dev–snapshot–2016-11-07–master–f07fa32 windows 7 6.1 amd64 Java 1.8.0_112 on Windows 7

Issue description

JabRef is no longer capable of getting through our authenticating firewall. I used to start JabRef like this:

"C:\Program Files\Java\jre1.8.0_112\bin\javaw.exe" -Dhttp.proxyHost="<myproxy>" -Dhttp.proxyPort="8080" -jar "C:\Users\<myname>\AppData\Local\JabRef\JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar"

This still worked with the 2016-10-16 snapshot but now no longer works with the 2016-11-07 snapshot. I also tried to specify proxy/port and user/password in JabRef’s settings explicitly, which did not help either.

If possible, it would be great if you made the 2016-10-16 jar file available to me again (which was removed by the update) so that I can check that this older version still works with the proxy and that this issue is is not due to some changes on our side.

Error console - messages caused by starting a medline search

10:56:46.754 [JabRef CachedThreadPool] ERROR net.sf.jabref.gui.importer.fetcher.SearchBasedEntryFetcher - Error while fetching from Medline
net.sf.jabref.logic.importer.FetcherException: Unable to get PubMed IDs
	at net.sf.jabref.logic.importer.fetcher.MedlineFetcher.getPubMedIdsFromQuery(MedlineFetcher.java:114) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fetcher.MedlineFetcher.performSearch(MedlineFetcher.java:162) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.gui.importer.fetcher.SearchBasedEntryFetcher.processQuery(SearchBasedEntryFetcher.java:37) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.gui.importer.fetcher.GeneralFetcher.lambda$actionPerformed$5(GeneralFetcher.java:217) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) [?:1.8.0_112]
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) [?:1.8.0_112]
	at java.lang.Thread.run(Unknown Source) [?:1.8.0_112]
Caused by: java.net.UnknownHostException: eutils.ncbi.nlm.nih.gov
	at java.net.AbstractPlainSocketImpl.connect(Unknown Source) ~[?:1.8.0_112]
	at java.net.PlainSocketImpl.connect(Unknown Source) ~[?:1.8.0_112]
	at java.net.SocksSocketImpl.connect(Unknown Source) ~[?:1.8.0_112]
	at java.net.Socket.connect(Unknown Source) ~[?:1.8.0_112]
	at sun.security.ssl.SSLSocketImpl.connect(Unknown Source) ~[?:1.8.0_112]
	at sun.security.ssl.BaseSSLSocketImpl.connect(Unknown Source) ~[?:1.8.0_112]
	at sun.net.NetworkClient.doConnect(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.http.HttpClient.openServer(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.http.HttpClient.openServer(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.protocol.https.HttpsClient.<init>(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.protocol.https.HttpsClient.New(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.protocol.http.HttpURLConnection.plainConnect(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.protocol.http.HttpURLConnection.getInputStream0(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.protocol.http.HttpURLConnection.getInputStream(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(Unknown Source) ~[?:1.8.0_112]
	at java.net.URL.openStream(Unknown Source) ~[?:1.8.0_112]
	at net.sf.jabref.logic.importer.fetcher.MedlineFetcher.getPubMedIdsFromQuery(MedlineFetcher.java:76) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	... 6 more

Error console - messages at startup

By the way, I already get quite a number of warnings just after startup before doing anything in the application:

10:55:06.760 [AWT-EventQueue-0] INFO  net.sf.jabref.logic.importer.OpenDatabase - Opening: C:\local\Bibliography\bibliography.bib
10:55:07.906 [AWT-EventQueue-0] WARN  net.sf.jabref.model.search.rules.GrammarBasedSearchRule - Search query invalid
org.antlr.v4.runtime.misc.ParseCancellationException: null
	at org.antlr.v4.runtime.BailErrorStrategy.recoverInline(BailErrorStrategy.java:90) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at org.antlr.v4.runtime.Parser.match(Parser.java:227) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.search.SearchParser.start(SearchParser.java:110) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.search.rules.GrammarBasedSearchRule.init(GrammarBasedSearchRule.java:91) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.search.rules.GrammarBasedSearchRule.validateSearchStrings(GrammarBasedSearchRule.java:108) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.search.rules.SearchRules.getSearchRuleByQuery(SearchRules.java:18) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.search.GroupSearchQuery.getSearchRule(GroupSearchQuery.java:35) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.search.GroupSearchQuery.<init>(GroupSearchQuery.java:20) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.groups.SearchGroup.<init>(SearchGroup.java:42) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.groups.GroupsParser.searchGroupFromString(GroupsParser.java:168) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.groups.GroupsParser.fromString(GroupsParser.java:79) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.groups.GroupsParser.importGroups(GroupsParser.java:39) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.util.MetaDataParser.parse(MetaDataParser.java:54) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fileformat.BibtexParser.parseFileContent(BibtexParser.java:237) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fileformat.BibtexParser.parse(BibtexParser.java:169) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fileformat.BibtexParser.parse(BibtexParser.java:89) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fileformat.BibtexImporter.importDatabase(BibtexImporter.java:70) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.Importer.importDatabase(Importer.java:74) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fileformat.BibtexImporter.importDatabase(BibtexImporter.java:62) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.OpenDatabase.loadDatabase(OpenDatabase.java:66) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.OpenDatabase.loadDatabase(OpenDatabase.java:43) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.JabRefGUI.openLastEditedDatabases(JabRefGUI.java:213) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.JabRefGUI.openWindow(JabRefGUI.java:97) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.JabRefGUI.<init>(JabRefGUI.java:66) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.JabRefMain.lambda$start$1(JabRefMain.java:123) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at java.awt.event.InvocationEvent.dispatch(Unknown Source) [?:1.8.0_112]
	at java.awt.EventQueue.dispatchEventImpl(Unknown Source) [?:1.8.0_112]
	at java.awt.EventQueue.access$500(Unknown Source) [?:1.8.0_112]
	at java.awt.EventQueue$3.run(Unknown Source) [?:1.8.0_112]
	at java.awt.EventQueue$3.run(Unknown Source) [?:1.8.0_112]
	at java.security.AccessController.doPrivileged(Native Method) ~[?:1.8.0_112]
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) [?:1.8.0_112]
	at java.awt.EventQueue.dispatchEvent(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.pumpEvents(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.pumpEvents(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.run(Unknown Source) [?:1.8.0_112]
Caused by: org.antlr.v4.runtime.InputMismatchException
	at org.antlr.v4.runtime.BailErrorStrategy.recoverInline(BailErrorStrategy.java:85) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	... 38 more
10:55:07.913 [AWT-EventQueue-0] WARN  net.sf.jabref.model.search.rules.GrammarBasedSearchRule - Search query invalid
org.antlr.v4.runtime.misc.ParseCancellationException: null
	at org.antlr.v4.runtime.BailErrorStrategy.recoverInline(BailErrorStrategy.java:90) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at org.antlr.v4.runtime.Parser.match(Parser.java:227) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.search.SearchParser.expression(SearchParser.java:220) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.search.SearchParser.start(SearchParser.java:108) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.search.rules.GrammarBasedSearchRule.init(GrammarBasedSearchRule.java:91) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.search.rules.GrammarBasedSearchRule.validateSearchStrings(GrammarBasedSearchRule.java:108) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.search.rules.SearchRules.getSearchRuleByQuery(SearchRules.java:18) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.search.GroupSearchQuery.getSearchRule(GroupSearchQuery.java:35) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.search.GroupSearchQuery.<init>(GroupSearchQuery.java:20) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.groups.SearchGroup.<init>(SearchGroup.java:42) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.groups.GroupsParser.searchGroupFromString(GroupsParser.java:168) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.groups.GroupsParser.fromString(GroupsParser.java:79) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.groups.GroupsParser.importGroups(GroupsParser.java:39) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.util.MetaDataParser.parse(MetaDataParser.java:54) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fileformat.BibtexParser.parseFileContent(BibtexParser.java:237) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fileformat.BibtexParser.parse(BibtexParser.java:169) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fileformat.BibtexParser.parse(BibtexParser.java:89) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fileformat.BibtexImporter.importDatabase(BibtexImporter.java:70) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.Importer.importDatabase(Importer.java:74) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fileformat.BibtexImporter.importDatabase(BibtexImporter.java:62) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.OpenDatabase.loadDatabase(OpenDatabase.java:66) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.OpenDatabase.loadDatabase(OpenDatabase.java:43) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.JabRefGUI.openLastEditedDatabases(JabRefGUI.java:213) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.JabRefGUI.openWindow(JabRefGUI.java:97) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.JabRefGUI.<init>(JabRefGUI.java:66) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.JabRefMain.lambda$start$1(JabRefMain.java:123) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at java.awt.event.InvocationEvent.dispatch(Unknown Source) [?:1.8.0_112]
	at java.awt.EventQueue.dispatchEventImpl(Unknown Source) [?:1.8.0_112]
	at java.awt.EventQueue.access$500(Unknown Source) [?:1.8.0_112]
	at java.awt.EventQueue$3.run(Unknown Source) [?:1.8.0_112]
	at java.awt.EventQueue$3.run(Unknown Source) [?:1.8.0_112]
	at java.security.AccessController.doPrivileged(Native Method) ~[?:1.8.0_112]
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) [?:1.8.0_112]
	at java.awt.EventQueue.dispatchEvent(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.pumpEvents(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.pumpEvents(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.run(Unknown Source) [?:1.8.0_112]
Caused by: org.antlr.v4.runtime.InputMismatchException
	at org.antlr.v4.runtime.BailErrorStrategy.recoverInline(BailErrorStrategy.java:85) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	... 39 more
10:55:07.917 [AWT-EventQueue-0] WARN  net.sf.jabref.model.search.rules.GrammarBasedSearchRule - Search query invalid
org.antlr.v4.runtime.misc.ParseCancellationException: null
	at org.antlr.v4.runtime.BailErrorStrategy.recoverInline(BailErrorStrategy.java:90) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at org.antlr.v4.runtime.Parser.match(Parser.java:227) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.search.SearchParser.expression(SearchParser.java:220) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.search.SearchParser.start(SearchParser.java:108) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.search.rules.GrammarBasedSearchRule.init(GrammarBasedSearchRule.java:91) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.search.rules.GrammarBasedSearchRule.validateSearchStrings(GrammarBasedSearchRule.java:108) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.search.rules.SearchRules.getSearchRuleByQuery(SearchRules.java:18) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.search.GroupSearchQuery.getSearchRule(GroupSearchQuery.java:35) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.search.GroupSearchQuery.<init>(GroupSearchQuery.java:20) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.groups.SearchGroup.<init>(SearchGroup.java:42) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.groups.GroupsParser.searchGroupFromString(GroupsParser.java:168) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.groups.GroupsParser.fromString(GroupsParser.java:79) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.groups.GroupsParser.importGroups(GroupsParser.java:39) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.util.MetaDataParser.parse(MetaDataParser.java:54) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fileformat.BibtexParser.parseFileContent(BibtexParser.java:237) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fileformat.BibtexParser.parse(BibtexParser.java:169) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fileformat.BibtexParser.parse(BibtexParser.java:89) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fileformat.BibtexImporter.importDatabase(BibtexImporter.java:70) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.Importer.importDatabase(Importer.java:74) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fileformat.BibtexImporter.importDatabase(BibtexImporter.java:62) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.OpenDatabase.loadDatabase(OpenDatabase.java:66) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.OpenDatabase.loadDatabase(OpenDatabase.java:43) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.JabRefGUI.openLastEditedDatabases(JabRefGUI.java:213) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.JabRefGUI.openWindow(JabRefGUI.java:97) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.JabRefGUI.<init>(JabRefGUI.java:66) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.JabRefMain.lambda$start$1(JabRefMain.java:123) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at java.awt.event.InvocationEvent.dispatch(Unknown Source) [?:1.8.0_112]
	at java.awt.EventQueue.dispatchEventImpl(Unknown Source) [?:1.8.0_112]
	at java.awt.EventQueue.access$500(Unknown Source) [?:1.8.0_112]
	at java.awt.EventQueue$3.run(Unknown Source) [?:1.8.0_112]
	at java.awt.EventQueue$3.run(Unknown Source) [?:1.8.0_112]
	at java.security.AccessController.doPrivileged(Native Method) ~[?:1.8.0_112]
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) [?:1.8.0_112]
	at java.awt.EventQueue.dispatchEvent(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.pumpEvents(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.pumpEvents(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.run(Unknown Source) [?:1.8.0_112]
Caused by: org.antlr.v4.runtime.InputMismatchException
	at org.antlr.v4.runtime.BailErrorStrategy.recoverInline(BailErrorStrategy.java:85) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	... 39 more
10:55:07.921 [AWT-EventQueue-0] WARN  net.sf.jabref.model.search.rules.GrammarBasedSearchRule - Search query invalid
org.antlr.v4.runtime.misc.ParseCancellationException: null
	at org.antlr.v4.runtime.BailErrorStrategy.recoverInline(BailErrorStrategy.java:90) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at org.antlr.v4.runtime.Parser.match(Parser.java:227) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.search.SearchParser.expression(SearchParser.java:220) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.search.SearchParser.start(SearchParser.java:108) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.search.rules.GrammarBasedSearchRule.init(GrammarBasedSearchRule.java:91) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.search.rules.GrammarBasedSearchRule.validateSearchStrings(GrammarBasedSearchRule.java:108) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.search.rules.SearchRules.getSearchRuleByQuery(SearchRules.java:18) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.search.GroupSearchQuery.getSearchRule(GroupSearchQuery.java:35) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.search.GroupSearchQuery.<init>(GroupSearchQuery.java:20) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.model.groups.SearchGroup.<init>(SearchGroup.java:42) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.groups.GroupsParser.searchGroupFromString(GroupsParser.java:168) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.groups.GroupsParser.fromString(GroupsParser.java:79) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.groups.GroupsParser.importGroups(GroupsParser.java:39) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.util.MetaDataParser.parse(MetaDataParser.java:54) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fileformat.BibtexParser.parseFileContent(BibtexParser.java:237) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fileformat.BibtexParser.parse(BibtexParser.java:169) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fileformat.BibtexParser.parse(BibtexParser.java:89) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fileformat.BibtexImporter.importDatabase(BibtexImporter.java:70) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.Importer.importDatabase(Importer.java:74) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.fileformat.BibtexImporter.importDatabase(BibtexImporter.java:62) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.OpenDatabase.loadDatabase(OpenDatabase.java:66) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.logic.importer.OpenDatabase.loadDatabase(OpenDatabase.java:43) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.JabRefGUI.openLastEditedDatabases(JabRefGUI.java:213) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.JabRefGUI.openWindow(JabRefGUI.java:97) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.JabRefGUI.<init>(JabRefGUI.java:66) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.JabRefMain.lambda$start$1(JabRefMain.java:123) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at java.awt.event.InvocationEvent.dispatch(Unknown Source) [?:1.8.0_112]
	at java.awt.EventQueue.dispatchEventImpl(Unknown Source) [?:1.8.0_112]
	at java.awt.EventQueue.access$500(Unknown Source) [?:1.8.0_112]
	at java.awt.EventQueue$3.run(Unknown Source) [?:1.8.0_112]
	at java.awt.EventQueue$3.run(Unknown Source) [?:1.8.0_112]
	at java.security.AccessController.doPrivileged(Native Method) ~[?:1.8.0_112]
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) [?:1.8.0_112]
	at java.awt.EventQueue.dispatchEvent(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.pumpEvents(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.pumpEvents(Unknown Source) [?:1.8.0_112]
	at java.awt.EventDispatchThread.run(Unknown Source) [?:1.8.0_112]
Caused by: org.antlr.v4.runtime.InputMismatchException
	at org.antlr.v4.runtime.BailErrorStrategy.recoverInline(BailErrorStrategy.java:85) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	... 39 more
10:55:07.926 [AWT-EventQueue-0] INFO  net.sf.jabref.logic.importer.OpenDatabase - Opening: C:\local\Bibliography\16349.bib
10:55:11.014 [SwingWorker-pool-5-thread-1] WARN  net.sf.jabref.gui.worker.VersionWorker - Could not connect to the updateserver.
java.net.UnknownHostException: api.github.com
	at java.net.AbstractPlainSocketImpl.connect(Unknown Source) ~[?:1.8.0_112]
	at java.net.PlainSocketImpl.connect(Unknown Source) ~[?:1.8.0_112]
	at java.net.SocksSocketImpl.connect(Unknown Source) ~[?:1.8.0_112]
	at java.net.Socket.connect(Unknown Source) ~[?:1.8.0_112]
	at sun.security.ssl.SSLSocketImpl.connect(Unknown Source) ~[?:1.8.0_112]
	at sun.security.ssl.BaseSSLSocketImpl.connect(Unknown Source) ~[?:1.8.0_112]
	at sun.net.NetworkClient.doConnect(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.http.HttpClient.openServer(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.http.HttpClient.openServer(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.protocol.https.HttpsClient.<init>(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.protocol.https.HttpsClient.New(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.protocol.http.HttpURLConnection.plainConnect(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.protocol.http.HttpURLConnection.getInputStream0(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.protocol.http.HttpURLConnection.getInputStream(Unknown Source) ~[?:1.8.0_112]
	at sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(Unknown Source) ~[?:1.8.0_112]
	at net.sf.jabref.logic.util.Version.getAllAvailableVersions(Version.java:93) ~[JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.gui.worker.VersionWorker.doInBackground(VersionWorker.java:55) [JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at net.sf.jabref.gui.worker.VersionWorker.doInBackground(VersionWorker.java:29) [JabRef-3.7-dev--snapshot--2016-11-07--master--f07fa32.jar:?]
	at javax.swing.SwingWorker$1.call(Unknown Source) [?:1.8.0_112]
	at java.util.concurrent.FutureTask.run(Unknown Source) [?:1.8.0_112]
	at javax.swing.SwingWorker.run(Unknown Source) [?:1.8.0_112]
	at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) [?:1.8.0_112]
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) [?:1.8.0_112]
	at java.lang.Thread.run(Unknown Source) [?:1.8.0_112]

About this issue

  • Original URL
  • State: closed
  • Created 8 years ago
  • Comments: 15 (9 by maintainers)

Commits related to this issue

Most upvoted comments

Okay, so we would need two options:

  • “Prompt for password on each startup”
  • “Save password locally” (with the note that this is stored unencrypted/can be unencrypted)

Would be fine for me, should be rather straightforward to implement but has not the highest priority as the workaround using the JVM params is already working

Edit: I created a feature request post here at discourse: http://discourse.jabref.org/t/prompt-for-proxy-password-on-startup/410

+1
matthiasgeiger on Jan 2, 2017
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