graphmap: segfault when building index only

Hello Ivan,

I was trying to build the index for my simulated GRCH38 genome using the command line:

graphmap align -I -r grch38.simu.fasta

The index ran about 7 minutes before issued seg fault error (see the file attached below).

graphmap.index.err.txt

I also tried to use .fa as the reference extension and with/without reads file, and the error persisted.

I am using graphmap v0.3.2.

Any insights on how I could fix this?

Thanks, Simo

About this issue

  • Original URL
  • State: closed
  • Created 7 years ago
  • Comments: 21 (9 by maintainers)

Most upvoted comments

Hi everyone,

there have been many updates and changes, and in the latest version I (hopefully) addressed all of the above issues. Would you mind giving it a spin to verify if everything is well now?

Best regards, Ivan.