graphmap: segfault when building index only
Hello Ivan,
I was trying to build the index for my simulated GRCH38 genome using the command line:
graphmap align -I -r grch38.simu.fasta
The index ran about 7 minutes before issued seg fault error (see the file attached below).
I also tried to use .fa as the reference extension and with/without reads file, and the error persisted.
I am using graphmap v0.3.2.
Any insights on how I could fix this?
Thanks, Simo
About this issue
- Original URL
- State: closed
- Created 7 years ago
- Comments: 21 (9 by maintainers)
Hi everyone,
there have been many updates and changes, and in the latest version I (hopefully) addressed all of the above issues. Would you mind giving it a spin to verify if everything is well now?
Best regards, Ivan.