pyABC: abc-server-dash FileNotFoundError: [Errno 2] No such file or directory: '.../pyabc/visserver/assets/square_v2.png'
Bug description
Running abc-server-dash
fails with this error:
Traceback (most recent call last):
File "/Users/pnanda/Library/Application Support/hatch/env/virtual/gransimcal/YDO745f3/gransimcal/bin/abc-server-dash", line 7, in <module>
from pyabc.visserver.server_dash import run_app
File "/Users/pnanda/Library/Application Support/hatch/env/virtual/gransimcal/YDO745f3/gransimcal/lib/python3.11/site-packages/pyabc/visserver/server_dash.py", line 31, in <module>
square_base64 = base64.b64encode(open(square_png, 'rb').read()).decode('ascii')
^^^^^^^^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory: '/Users/pnanda/Library/Application Support/hatch/env/virtual/gransimcal/YDO745f3/gransimcal/lib/python3.11/site-packages/pyabc/visserver/assets/square_v2.png'
$ tree "/Users/pnanda/Library/Application Support/hatch/env/virtual/gransimcal/YDO745f3/gransimcal/lib/python3.11/site-packages/pyabc/visserver/"
/Users/pnanda/Library/Application Support/hatch/env/virtual/gransimcal/YDO745f3/gransimcal/lib/python3.11/site-packages/pyabc/visserver/
├── __init__.py
├── __pycache__
│ ├── __init__.cpython-311.pyc
│ ├── server_dash.cpython-311.pyc
│ └── server_flask.cpython-311.pyc
├── server_dash.py
├── server_flask.py
├── static
│ ├── abc_run_list_panel_image.svg
│ ├── abcstyle.css
│ └── server_info_panel_image.svg
└── templates
├── 404.html
├── abc_detail.html
├── abc_overview.html
├── base.html
├── index.html
├── model.html
└── server_info.html
4 directories, 16 files
Expected behavior
abc-server-dash
should launch without errors.
To reproduce
$ cat pyproject.toml
[build-system]
build-backend = "hatchling.build"
requires = [
"hatchling",
]
[project]
name = "calibrate"
version = "0.1"
description = "Calibrate model to available datasets"
dependencies = [
"dash", # for abc-server-dash
"dash-bootstrap-components", # for abc-server-dash
"lxml",
"pyabc[pyarrow]",
]
$ hatch shell
$ abc-server-dash
Environment
$ hatch dep show table
Project
┏━━━━━━━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━┓
┃ Name ┃ Features ┃
┡━━━━━━━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━┩
│ dash │ │
│ dash-bootstrap-components │ │
│ lxml │ │
│ pyabc │ pyarrow │
└───────────────────────────┴──────────┘
$ # Enter virtual environment for subsequent commands
$ hatch shell
$ python -V
Python 3.11.5
$ pip show pyabc
Name: pyabc
Version: 0.12.12
Summary: Distributed, likelihood-free ABC-SMC inference
Home-page: https://github.com/icb-dcm/pyabc
Author: The pyABC developers
Author-email: yannik.schaelte@gmail.com
License: BSD-3-Clause
Location: /Users/pnanda/Library/Application Support/hatch/env/virtual/gransimcal/YDO745f3/gransimcal/lib/python3.11/site-packages
Requires: click, cloudpickle, distributed, gitpython, jabbar, matplotlib, numpy, pandas, redis, scikit-learn, scipy, sqlalchemy
Required-by: gransimcal
$ pip list
Package Version Editable project location
------------------------- ------------ ----------------------------------------------------------------------
ansi2html 1.8.0
certifi 2023.7.22
charset-normalizer 3.3.0
click 8.1.7
cloudpickle 2.2.1
contourpy 1.1.1
cycler 0.11.0
dash 2.14.0
dash-bootstrap-components 1.5.0
dash-core-components 2.0.0
dash-html-components 2.0.0
dash-table 5.0.0
dask 2023.9.2
distributed 2023.9.2
Flask 2.2.5
fonttools 4.42.1
fsspec 2023.9.2
gitdb 4.0.10
GitPython 3.1.37
gransimcal 0.0.1 /Users/pnanda/immunology/GR-ABM-ODE/simulation/scripts/calibration/abc
idna 3.4
importlib-metadata 6.8.0
itsdangerous 2.1.2
jabbar 0.0.16
Jinja2 3.1.2
joblib 1.3.2
kiwisolver 1.4.5
locket 1.0.0
lxml 4.9.3
MarkupSafe 2.1.3
matplotlib 3.8.0
msgpack 1.0.6
nest-asyncio 1.5.8
numpy 1.26.0
packaging 23.1
pandas 2.1.1
partd 1.4.1
Pillow 10.0.1
pip 23.2.1
plotly 5.17.0
psutil 5.9.5
pyabc 0.12.12
pyarrow 13.0.0
pyparsing 3.1.1
python-dateutil 2.8.2
pytz 2023.3.post1
PyYAML 6.0.1
redis 5.0.1
requests 2.31.0
retrying 1.3.4
scikit-learn 1.3.1
scipy 1.11.2
setuptools 68.2.0
setuptools-scm 8.0.3
setuptools-svn 1.3.0
six 1.16.0
smmap 5.0.1
sortedcontainers 2.4.0
SQLAlchemy 2.0.21
tblib 2.0.0
tenacity 8.2.3
threadpoolctl 3.2.0
toolz 0.12.0
tornado 6.3.3
typing_extensions 4.8.0
tzdata 2023.3
urllib3 2.0.5
Werkzeug 2.2.3
wheel 0.41.2
zict 3.0.0
zipp 3.17.0
$ sw_vers
ProductName: macOS
ProductVersion: 13.6
BuildVersion: 22G120
$ system_profiler SPHardwareDataType
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: Mac14,2
Model Number: Z15W001BLLL/A
Chip: Apple M2
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 8422.141.2
OS Loader Version: 8422.141.2
Serial Number (system): V0MVP21HX4
Hardware UUID: 77AB0079-DE3C-54F0-8708-0262EF5ABEB5
Provisioning UDID: 00008112-001151A93EF0C01E
Activation Lock Status: Disabled
$ uname -a
Darwin ltfra117.wifi.med.umich.edu 22.6.0 Darwin Kernel Version 22.6.0: Fri Sep 15 13:39:54 PDT 2023; root:xnu-8796.141.3.700.8~1/RELEASE_ARM64_T8112 arm64
About this issue
- Original URL
- State: closed
- Created 9 months ago
- Comments: 15
Neither of those versions 0.12.9 and 0.12.10 even provide the
abc-server-dash
executable:With the current version: