deepconsensus: [Repeat] Running deepconsensus results in "free(): invalid pointer" error

The same issue as mentioned in #48 popped up for me again with version 1.1.0:

$ python3 -m venv /zapps7/deepconsensus/1.1.0/python-3.8.2_cpu
...
$ source /zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/activate
$ pip install --upgrade pip
...
$ pip install deepconsensus[cpu]==1.1.0
...
$ ./deepconsensus -h
2023-01-27 16:32:20.852846: I tensorflow/core/platform/cpu_feature_guard.cc:193] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations:  AVX2 AVX512F AVX512_VNNI FMA
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
*** Error in `/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python': free(): invalid pointer: 0x00007f73f7ba7c80 ***
======= Backtrace: =========
/lib64/libc.so.6(+0x81329)[0x7f742894a329]
/lib64/libstdc++.so.6(_ZNSt6locale5_Impl16_M_install_facetEPKNS_2idEPKNS_5facetE+0x142)[0x7f73f7911192]
/lib64/libstdc++.so.6(_ZNSt6locale5_ImplC1Em+0x1e3)[0x7f73f79115e3]
/lib64/libstdc++.so.6(+0x71555)[0x7f73f7912555]
/lib64/libpthread.so.0(+0x620b)[0x7f74293a620b]
/lib64/libstdc++.so.6(+0x715a1)[0x7f73f79125a1]
/lib64/libstdc++.so.6(_ZNSt6localeC2Ev+0x13)[0x7f73f79125e3]
/lib64/libstdc++.so.6(_ZNSt8ios_base4InitC2Ev+0xbc)[0x7f73f790f43c]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/lib/python3.8/site-packages/google/protobuf/pyext/_message.cpython-38-x86_64-linux-gnu.so(+0xb1150)[0x7f73f76e1150]
/lib64/ld-linux-x86-64.so.2(+0xf9c3)[0x7f74298029c3]
/lib64/ld-linux-x86-64.so.2(+0x1459e)[0x7f742980759e]
/lib64/ld-linux-x86-64.so.2(+0xf7d4)[0x7f74298027d4]
/lib64/ld-linux-x86-64.so.2(+0x13b8b)[0x7f7429806b8b]
/lib64/libdl.so.2(+0xfab)[0x7f742919cfab]
/lib64/ld-linux-x86-64.so.2(+0xf7d4)[0x7f74298027d4]
/lib64/libdl.so.2(+0x15ad)[0x7f742919d5ad]
/lib64/libdl.so.2(dlopen+0x31)[0x7f742919d041]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyImport_FindSharedFuncptr+0x16b)[0x539abb]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyImport_LoadDynamicModuleWithSpec+0x159)[0x503e69]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python[0x501a23]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python[0x46f563]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(PyVectorcall_Call+0x5c)[0x439d8c]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyEval_EvalFrameDefault+0x76d8)[0x42a308]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyEval_EvalCodeWithName+0xadf)[0x4e171f]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyFunction_Vectorcall+0x90)[0x438570]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python[0x422821]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyEval_EvalFrameDefault+0x5f91)[0x428bc1]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python[0x421571]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python[0x422821]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyEval_EvalFrameDefault+0x1fb5)[0x424be5]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python[0x421571]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python[0x422821]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyEval_EvalFrameDefault+0x15af)[0x4241df]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python[0x421571]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python[0x422821]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyEval_EvalFrameDefault+0x15af)[0x4241df]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python[0x421571]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python[0x422821]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyEval_EvalFrameDefault+0x15af)[0x4241df]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python[0x421571]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python[0x437f74]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyObject_CallMethodIdObjArgs+0xf1)[0x439831]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(PyImport_ImportModuleLevelObject+0x3fd)[0x502c8d]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python[0x5ee426]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python[0x437c24]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyEval_EvalFrameDefault+0x76d8)[0x42a308]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyEval_EvalCodeWithName+0xadf)[0x4e171f]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyFunction_Vectorcall+0x90)[0x438570]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python[0x422821]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyEval_EvalFrameDefault+0x15af)[0x4241df]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyEval_EvalCodeWithName+0xadf)[0x4e171f]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyFunction_Vectorcall+0x90)[0x438570]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python[0x437f74]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyObject_CallMethodIdObjArgs+0xf1)[0x439831]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(PyImport_ImportModuleLevelObject+0x4e6)[0x502d76]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyEval_EvalFrameDefault+0x6e78)[0x429aa8]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyEval_EvalCodeWithName+0xadf)[0x4e171f]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(PyEval_EvalCode+0x23)[0x4e1b43]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python[0x5efe34]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python[0x46f563]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(PyVectorcall_Call+0x5c)[0x439d8c]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyEval_EvalFrameDefault+0x76d8)[0x42a308]
/zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/bin/python(_PyEval_EvalCodeWithName+0xadf)[0x4e171f]
======= Memory map: ========
00400000-006f3000 r-xp 00000000 00:32 37327427                           /zapps7/python/3.8.2/gcc-9.2.0/bin/python3.8
008f2000-008f3000 r--p 002f2000 00:32 37327427                           /zapps7/python/3.8.2/gcc-9.2.0/bin/python3.8
008f3000-0092b000 rw-p 002f3000 00:32 37327427                           /zapps7/python/3.8.2/gcc-9.2.0/bin/python3.8
0092b000-0094c000 rw-p 00000000 00:00 0 
00a61000-01e9b000 rw-p 00000000 00:00 0                                  [heap]
7f73f0000000-7f73f0021000 rw-p 00000000 00:00 0 
7f73f0021000-7f73f4000000 ---p 00000000 00:00 0 
7f73f7630000-7f73f76cd000 r--p 00000000 00:32 59849580                   /zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/lib/python3.8/site-packages/google/protobuf/pyext/_message.cpython-38-x86_64-linux-gnu.so
7f73f76cd000-7f73f781c000 r-xp 0009d000 00:32 59849580                   /zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/lib/python3.8/site-packages/google/protobuf/pyext/_message.cpython-38-x86_64-linux-gnu.so
7f73f781c000-7f73f7890000 r--p 001ec000 00:32 59849580                   /zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/lib/python3.8/site-packages/google/protobuf/pyext/_message.cpython-38-x86_64-linux-gnu.so
7f73f7890000-7f73f7891000 ---p 00260000 00:32 59849580                   /zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/lib/python3.8/site-packages/google/protobuf/pyext/_message.cpython-38-x86_64-linux-gnu.so
7f73f7891000-7f73f7896000 r--p 00260000 00:32 59849580                   /zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/lib/python3.8/site-packages/google/protobuf/pyext/_message.cpython-38-x86_64-linux-gnu.so
7f73f7896000-7f73f78a0000 rw-p 00265000 00:32 59849580                   /zapps7/deepconsensus/1.1.0/python-3.8.2_cpu/lib/python3.8/site-packages/google/protobuf/pyext/_message.cpython-38-x86_64-linux-gnu.so

I’ve messed with dependency versions but haven’t found a combination that works.

I wasn’t sure whether opening a new issue or commenting on the old one was the right way to go, feel free to close this if just using #48 is the preferred way.