Sniffles: Segmentation Fault on Test File

Hi Fritz, I am getting a segmentation fault when running the test case on my cluster.

I compiled with gcc/g++ version 4.8.5.

When running the test case sniffles -m reads_region.bam -v test., I get the following

Estimating parameter...

	Max dist between aln events: 4

	Max diff in window: 50

	Min score ratio: 2

	Avg DEL ratio: 0.0432235

	Avg INS ratio: 0.0740733`

Start parsing... 21

	Switch Chr 21

Finalizing  ..

Segmentation fault

I’ve tried recompiling with newer versions of GNU compilers (v5 and 6), but haven’t been successful.

Any help would be much appreciated.

Kevin McFarland Johns Hopkins University Chemical & Biomolecular Engineering