Sniffles: BUG: split read ins!

Hi Fritz,

I am trying to run a job on a large genome (2.8Gb). This is the consensus of a ighly heterozygous genome, so there should be a fair amount of heterozygous SV. I am getting an error in the first contig (42 thousand contigs in total). The command line was as follows:

sniffles -z 3 -d 10000 -t 26 -n -1 --report_BND --genotype --cluster --min_het_af 0.2 -m inia601.bam -v inia601.vcf
Estimating parameter...
        Max dist between aln events: 4
        Max diff in window: 50
        Min score ratio: 2
        Avg DEL ratio: 0.0315592
        Avg INS ratio: 0.154157
Start parsing... ctg1
BUG: split read ins! 6123 2852 m54329U_200324_174744/150668912/36192_62717
terminate called after throwing an instance of 'std::out_of_range'
  what():  basic_string::substr
/var/spool/slurm/job4679576/slurm_script: line 38: 32633 Aborted                 (core dumped) sniffles -z 3 -d 10000 -t 26 -n -1 --report_BND --genotype --cluster --min_het_af 0.2 -m $bam -v inia601.vcf

I was trying to look for similar errors in this page, but they all seem to be at least half a year old and none related to any of the flags used for this run. could you perhaps point me in the right direction, what could be going wrong here?

Cheers,

Juan D. Montenegro