eslint: Linting doesn't work on Windows when node_modules is present in folder

What version of ESLint are you using? v2.6.0 What parser (default, Babel-ESLint, etc.) are you using? default Please show your full configuration:

{
    "rules": {
        "semi": [
            2,
            "always"
        ]
    }
}

What did you do? Please include the actual source code causing the issue.

filipe.silva@DESKTOP-7ND6T3R MINGW64 /E/sandbox/eslint-test
$ node -v
v4.2.1

filipe.silva@DESKTOP-7ND6T3R MINGW64 /E/sandbox/eslint-test
$ npm -v
2.14.7

filipe.silva@DESKTOP-7ND6T3R MINGW64 /E/sandbox/eslint-test
$ eslint -v
v2.6.0

filipe.silva@DESKTOP-7ND6T3R MINGW64 /E/sandbox/eslint-test
$ ls -la
total 10
drwxr-xr-x 1 filipe.silva filipe.silva  0 Apr  4 12:50 ./
drwxr-xr-x 1 filipe.silva filipe.silva  0 Apr  4 12:36 ../
-rw-r--r-- 1 filipe.silva filipe.silva 89 Apr  4 12:37 .eslintrc.json
-rw-r--r-- 1 filipe.silva filipe.silva 11 Apr  4 12:38 test.js

filipe.silva@DESKTOP-7ND6T3R MINGW64 /E/sandbox/eslint-test
$ cat .eslintrc.json
{
    "rules": {
        "semi": [
            2,
            "always"
        ]
    }
}

filipe.silva@DESKTOP-7ND6T3R MINGW64 /E/sandbox/eslint-test
$ cat test.js
var a = 1

filipe.silva@DESKTOP-7ND6T3R MINGW64 /E/sandbox/eslint-test
$ eslint ./**/*.js

E:\sandbox\eslint-test\test.js
  1:10  error  Missing semicolon  semi

✖ 1 problem (1 error, 0 warnings)


filipe.silva@DESKTOP-7ND6T3R MINGW64 /E/sandbox/eslint-test
$ mkdir node_modules

filipe.silva@DESKTOP-7ND6T3R MINGW64 /E/sandbox/eslint-test
$ cp test.js node_modules/test.js

filipe.silva@DESKTOP-7ND6T3R MINGW64 /E/sandbox/eslint-test
$ eslint ./**/*.js

filipe.silva@DESKTOP-7ND6T3R MINGW64 /E/sandbox/eslint-test
$

What did you expect to happen? I expected that running eslint ./**/*.js the second time would show the same result as the first time. What actually happened? Please include the actual, raw output from ESLint. Nothing was shown when running the command a second time.

This was run on a win10 machine using githbash.