xgboost: Problems while installing in OSX 10.11.6?
I am trying to install xgboost’s python wrapper in OSX 10.11.6 with python3. Firstly, I did:
user@MacBook-Pro-de-User-2:~$ brew install gcc --without-multilib
==> Using the sandbox
==> Downloading https://ftpmirror.gnu.org/gcc/gcc-6.2.0/gcc-6.2.0.tar.bz2
Already downloaded: /Users/user/Library/Caches/Homebrew/gcc-6.2.0.tar.bz2
==> Downloading https://raw.githubusercontent.com/Homebrew/formula-patches/e9e0
Already downloaded: /Users/user/Library/Caches/Homebrew/gcc--patch-863957f90a934ee8f89707980473769cff47ca0663c3906992da6afb242fb220.patch
==> Patching
==> Applying 6.1.0-jit.patch
patching file gcc/jit/Make-lang.in
==> ../configure --build=x86_64-apple-darwin15.6.0 --prefix=/usr/local/Cellar/g
==> make bootstrap
==> make install
🍺 /usr/local/Cellar/gcc/6.2.0: 1,357 files, 242.5M, built in 69 minutes 18 seconds
Then, when I proceed to install xgboost with pip3, I get the following:
user@MacBook-Pro-de-User-2:~$ pip3 install xgboost
Collecting xgboost
Using cached xgboost-0.6a2.tar.gz
Complete output from command python setup.py egg_info:
rm -f -rf build build_plugin lib bin *~ */*~ */*/*~ */*/*/*~ */*.o */*/*.o */*/*/*.o xgboost
clang-omp++ -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/learner.o src/learner.cc >build/learner.d
/bin/sh: clang-omp++: command not found
make: *** [build/learner.o] Error 127
make: *** Waiting for unfinished jobs....
clang-omp++ -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/logging.o src/logging.cc >build/logging.d
/bin/sh: clang-omp++: command not found
make: *** [build/logging.o] Error 127
-----------------------------
Building multi-thread xgboost failed
Start to build single-thread xgboost
rm -f -rf build build_plugin lib bin *~ */*~ */*/*~ */*/*/*~ */*.o */*/*.o */*/*/*.o xgboost
clang-omp++ -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/learner.o src/learner.cc >build/learner.d
/bin/sh: clang-omp++: command not found
make: *** [build/learner.o] Error 127
make: *** Waiting for unfinished jobs....
clang-omp++ -std=c++0x -Wall -O3 -msse2 -Wno-unknown-pragmas -funroll-loops -Iinclude -Idmlc-core/include -Irabit/include -fPIC -fopenmp -MM -MT build/logging.o src/logging.cc >build/logging.d
/bin/sh: clang-omp++: command not found
make: *** [build/logging.o] Error 127
Successfully build single-thread xgboost
If you want multi-threaded version
See additional instructions in doc/build.md
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/private/var/folders/hg/zkgs3l417b7_0l4vth4bf8l00000gn/T/pip-build-hsmd0nxh/xgboost/setup.py", line 29, in <module>
LIB_PATH = libpath['find_lib_path']()
File "/private/var/folders/hg/zkgs3l417b7_0l4vth4bf8l00000gn/T/pip-build-hsmd0nxh/xgboost/xgboost/libpath.py", line 45, in find_lib_path
'List of candidates:\n' + ('\n'.join(dll_path)))
XGBoostLibraryNotFound: Cannot find XGBoost Libarary in the candicate path, did you install compilers and run build.sh in root path?
List of candidates:
/private/var/folders/hg/zkgs3l417b7_0l4vth4bf8l00000gn/T/pip-build-hsmd0nxh/xgboost/xgboost/libxgboost.so
/private/var/folders/hg/zkgs3l417b7_0l4vth4bf8l00000gn/T/pip-build-hsmd0nxh/xgboost/xgboost/../../lib/libxgboost.so
/private/var/folders/hg/zkgs3l417b7_0l4vth4bf8l00000gn/T/pip-build-hsmd0nxh/xgboost/xgboost/./lib/libxgboost.so
----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in /private/var/folders/hg/zkgs3l417b7_0l4vth4bf8l00000gn/T/pip-build-hsmd0nxh/xgboost/
Then I tried to build it as the documentation states:
Last login: Tue Aug 23 20:53:31 on ttys000
user@MacBook-Pro-de-User-2:~$ git clone --recursive https://github.com/dmlc/xgboost
Cloning into 'xgboost'...
remote: Counting objects: 17651, done.
remote: Compressing objects: 100% (28/28), done.
remote: Total 17651 (delta 9), reused 0 (delta 0), pack-reused 17611
Receiving objects: 100% (17651/17651), 5.80 MiB | 1.08 MiB/s, done.
Resolving deltas: 100% (10851/10851), done.
Checking connectivity... done.
Submodule 'dmlc-core' (https://github.com/dmlc/dmlc-core) registered for path 'dmlc-core'
Submodule 'rabit' (https://github.com/dmlc/rabit) registered for path 'rabit'
Cloning into 'dmlc-core'...
remote: Counting objects: 3710, done.
remote: Total 3710 (delta 0), reused 0 (delta 0), pack-reused 3710
Receiving objects: 100% (3710/3710), 822.86 KiB | 864.00 KiB/s, done.
Resolving deltas: 100% (2197/2197), done.
Checking connectivity... done.
Submodule path 'dmlc-core': checked out 'd8d4dccb8bd89af9f57aa19e7523f0b755563ca4'
Cloning into 'rabit'...
remote: Counting objects: 3096, done.
remote: Compressing objects: 100% (6/6), done.
remote: Total 3096 (delta 0), reused 0 (delta 0), pack-reused 3090
Receiving objects: 100% (3096/3096), 886.44 KiB | 904.00 KiB/s, done.
Resolving deltas: 100% (2007/2007), done.
Checking connectivity... done.
Submodule path 'rabit': checked out '2dd7476ad7e4afe97eb579d39aab226ff74400a6'
Then, I tried to build as follows:
user@MacBook-Pro-de-User-2:/$ cd xgboost; cp make/config.mk ./config.mk; make -j4
-bash: cd: xgboost: No such file or directory
cp: make/config.mk: No such file or directory
make: *** No targets specified and no makefile found. Stop.
Any idea of how to install correctly xgboost?.. a month ago I’ve installed xgboost with pip3 and I did not face the above issues.
About this issue
- Original URL
- State: closed
- Created 8 years ago
- Reactions: 3
- Comments: 37 (12 by maintainers)
Links to this issue
Commits related to this issue
- Update README (#2204) I found the installation of the Python XGBoost package to be problematic as the documentation around compiler requirements was unclear, as discussed in #1501. I decided that I w... — committed to dmlc/xgboost by JoeNyland 7 years ago
- Update README (#2204) I found the installation of the Python XGBoost package to be problematic as the documentation around compiler requirements was unclear, as discussed in #1501. I decided that I w... — committed to CodingCat/xgboost by JoeNyland 7 years ago
Success! 🎉
I found this here:
Bearing that in mind, I tried this and it allows me to install from pip!
I have no idea why this works but
brew install gcc --without-multilibdidn’t.I can’t help but think other users will fall into this trap and waste time trying to work out what is actually going wrong. Hopefully this workaround works for them but I’d prefer to see a more reliable installation routine from the pip package 🤞
Although I installed gcc 5 (with brew), the xgboost build still used the LLVM version of gcc (7 in my case). To get the build to use gcc 5 I did:
and this worked for me.
Apparently this worked for OSX:
However, I would like to know if there is an easier way to install it, any suggestion guys?.
I installed gcc7.1.0 with
brew install gcc --without-multilib, then cloned xgboost, cd-ed into the folder, and editedmake/config.mkto haveand finally executed
cp make/minimum.mk ./config.mk; make -j4then cd-ed into
python-packageand executedsudo python3 setup.py install@d2Code I know I can install from source, but I need to install from pip. I’m trying to get to the bottom of why I can’t install from pip.
In addition to @davidread 's solution, if pip install doesn’t work for you, try the second line as:
env CC=gcc-5 CXX=g++-5 pip3 install xgboostThis should work!@alonsopg the current
pipinstallation requiresgcc-5orclang-ompwhich both can be installed viabrew. It was done before the recent instruction update. Since major Mac OS X users now usegcc-6, I will update the next version to gcc-6, meanwhile, please install from github as you have compiled@JoeNyland’s solution worked for me also. Thanks!!
The following worked for me to get the newest version of XGBoost into Anaconda painlessly:
brew(if not already there)Yes, agreed. The pip installation was made for the golden stable version of xgboost so a stable version of gcc was chosen. The pip installation will soon use the official release and get precompiled binary as planned.
However I still get the following error message after running $ brew install gcc@5 $ pip install xgboost
Any idea why am I getting this? Much appreciate.
Command “python setup.py egg_info” failed with error code 1 in /private/var/folders/60/6w9_z9yd24n7nwv1cg23zz340000gn/T/pip-build-B7gSEL/xgboost/
thank for your solution!@JoeNyland