cython: Cython 0.29 cannot import 'pythran_is_numpy_func_supported'
After installing Cython 0.29 I was unable to run the line:
from Cython.Build.Inline import _get_build_extension
The full error message is below. It appears, for example, when calling pystan.
<ipython-input-4-468ee6613710> in <module>()
----> 1 import pystan
2 overwrite=False
3 nocov = '''
4 functions {
5 real bailerjones_lpdf(real r, real L){ //This is our distance prior
~/.local/lib/python3.6/site-packages/pystan/__init__.py in <module>()
7 import logging
8
----> 9 from pystan.api import stanc, stan
10 from pystan.misc import read_rdump, stan_rdump, stansummary
11 from pystan.diagnostics import check_hmc_diagnostics
~/.local/lib/python3.6/site-packages/pystan/api.py in <module>()
14 import pystan._api # stanc wrapper
15 from pystan._compat import string_types, PY2
---> 16 from pystan.model import StanModel
17
18 logger = logging.getLogger('pystan')
~/.local/lib/python3.6/site-packages/pystan/model.py in <module>()
30
31 import Cython
---> 32 from Cython.Build.Inline import _get_build_extension
33 from Cython.Build.Dependencies import cythonize
34
~/.local/lib/python3.6/site-packages/Cython/Build/Inline.py in <module>()
15 from ..Compiler.Main import Context, CompilationOptions, default_options
16
---> 17 from ..Compiler.ParseTreeTransforms import (CythonTransform,
18 SkipDeclarations, AnalyseDeclarationsTransform, EnvTransform)
19 from ..Compiler.TreeFragment import parse_from_strings
~/.local/lib/python3.6/site-packages/Cython/Compiler/ParseTreeTransforms.py in <module>()
12 from . import PyrexTypes
13 from . import Naming
---> 14 from . import ExprNodes
15 from . import Nodes
16 from . import Options
~/.local/lib/python3.6/site-packages/Cython/Compiler/ExprNodes.py in <module>()
44 from .DebugFlags import debug_disposal_code, debug_temp_alloc, \
45 debug_coercion
---> 46 from .Pythran import (to_pythran, is_pythran_supported_type, is_pythran_supported_operation_type,
47 is_pythran_expr, pythran_func_type, pythran_binop_type, pythran_unaryop_type, has_np_pythran,
48 pythran_indexing_code, pythran_indexing_type, is_pythran_supported_node_or_none, pythran_type,
ImportError: cannot import name 'pythran_is_numpy_func_supported'
I also received the error message when attempting the following from commandline:
pip3 install cftime --user.
This has been resolved since reverting to version 0.28.5.
I am using Ubuntu 18.04 and Python 3.6.6.
About this issue
- Original URL
- State: closed
- Created 6 years ago
- Reactions: 13
- Comments: 15 (3 by maintainers)
I saw this error in cython-0.29.6. But error fixed. repeat this command “pip3 uninstall cython” till showing this message “Cannot uninstall requirement cython, not installed” and install again “pip3 install cython”
same problem. I back to 0.28.5 solved it.
Hi, I had the same problem with 0.29.14 and solved it by downgrading to 0.28.5
Might be a circular import dependency. Investigation and PR welcome.
My experience is somewhat different. I’m still seeing this error in version 0.29.5: