phy: WaveformView won't show up
Hi !
I’m working on a project were I’m performing spike sorting using SpikeInterface (SpikingCircus2 as sorter) and I’m trying to use Phy on my data. I made it work fine a few weeks ago but now, my data is loading but the WaveformView panel don’t show the traces.
I though this was coming from some environment updates, so I tried to reinstall phy from this environment : https://github.com/cortex-lab/phy/blob/master/environment.yml
Unfortunately it did not fix the issue.
This is the error I get :
File "C:\Users\user.name\Anaconda3\envs\phy2\Lib\site-packages\phy\gui\qt.py", line 547, in run
result = self.fn(*self.args, **self.kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\user.name\Anaconda3\envs\phy2\Lib\site-packages\phy\cluster\views\base.py", line 175, in _worker
self.on_select(cluster_ids=cluster_ids, **kwargs)
File "C:\Users\user.name\Anaconda3\envs\phy2\Lib\site-packages\phy\cluster\views\base.py", line 143, in on_select
self.plot(**kwargs)
File "C:\Users\user.name\Anaconda3\envs\phy2\Lib\site-packages\phy\cluster\views\waveform.py", line 311, in plot
bunchs = self.get_clusters_data()
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\user.name\Anaconda3\envs\phy2\Lib\site-packages\phy\cluster\views\waveform.py", line 189, in get_clusters_data
bunchs = [
^
File "C:\Users\user.name\Anaconda3\envs\phy2\Lib\site-packages\phy\cluster\views\waveform.py", line 190, in <listcomp>
self.waveforms_types.get()(cluster_id) for cluster_id in self.cluster_ids]
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\user.name\Anaconda3\envs\phy2\Lib\site-packages\phy\utils\context.py", line 154, in memcached
out = f(*args, **kwargs)
^^^^^^^^^^^^^^^^^^
File "C:\Users\user.name\Anaconda3\envs\phy2\Lib\site-packages\phy\apps\base.py", line 562, in _get_template_waveforms
data[i][:, b.channel_ids] = b.template
And this is what the gui is showing up :
Any help would be appreciated 😃
Thanks, Anthony
About this issue
- Original URL
- State: closed
- Created 10 months ago
- Comments: 18 (9 by maintainers)
Hi @zm711,
Sorry, I was on holidays and I didn’t have time to test it yet ! I will do it asap and keep you updated of course !
Thank you !
Okay I will try that asap and keep you updated thank you !