cellfinder: [BUG]aMap registration only in cellfinder with window10

Hi Adam, Thank you for releasing the cellfinder version with Window support. I’m trying to only register a brain sample that was already downsampled to isotropic 10um resolution, but error was reported in windows 10. 1, Basic testing with only detection worked fine, with a .xml file output with candidate cell coordinates. cellfinder -s "C:\Users\Steinmetz lab\Documents\amap_data\ERAE23_3c" -b "C:\Users\Steinmetz lab\Documents\amap_data\ERAE23_3c" -o "C:\Users\Steinmetz lab\Documents\amap_data\ERAE23_3c_output" -x 10 -y 10 -z 10 --no-classification 2, aMap registration only, failed with error message. cellfinder -s "C:\Users\Steinmetz lab\Documents\amap_data\ERAE23_3c" -b "C:\Users\Steinmetz lab\Documents\amap_data\ERAE23_3c" -o "C:\Users\Steinmetz lab\Documents\amap_data\ERAE23_3c_output" -x 10 -y 10 -z 10 --flip-x --register --no-detection --no-classification

2020-05-06 23:59:20 PM - INFO - MainProcess fancylog.py:265 - Starting logging Traceback (most recent call last): 2020-05-06 23:59:20 PM - INFO - MainProcess fancylog.py:267 - Multiprocessing-logging module found. Logging from all processes File “c:\users\steinmetz lab\appdata\local\programs\python\python37\lib\runpy.py”, line 193, in _run_module_as_main 2020-05-06 23:59:20 PM - INFO - MainProcess main.py:32 - Registering to atlas “main”, mod_spec)2020-05-06 23:59:20 PM - INFO - MainProcess prep.py:401 - Checking whether the atlas exists

File “c:\users\steinmetz lab\appdata\local\programs\python\python37\lib\runpy.py”, line 85, in run_code exec(code, run_globals) File "C:\Users\Steinmetz lab\AppData\Local\Programs\Python\Python37\Scripts\cellfinder.exe_main.py", line 7, in <module> File “c:\users\steinmetz lab\appdata\local\programs\python\python37\lib\site-packages\cellfinder\main.py”, line 61, in main debug=args.debug, File “c:\users\steinmetz lab\appdata\local\programs\python\python37\lib\site-packages\amap\main.py”, line 93, in main registration_config, dest_folder=Path(registration_output_folder) File “c:\users\steinmetz lab\appdata\local\programs\python\python37\lib\site-packages\amap\config\atlas.py”, line 25, in init super().init(config_path) File “c:\users\steinmetz lab\appdata\local\programs\python\python37\lib\site-packages\neuro\atlas\atlas_class.py”, line 24, in init atlas_id = list(data_dict.keys())[0] # assume only one key IndexError: list index out of range

Any ideas why this happened? I have ran “cellfinder_download” before hand to download atlas to default folders.