bcbio-nextgen: Error running bcbio with ipython on torque system

Hi!

First of all, this pipeline is highly flexible and following the current best ngs practices. I developed my own pipelines, but I’m currently switching to this community maintained pipeline!

Running locally works perfect, but when I switches to our cluster environment (torque based) I ran in some errors. I have different nodes in the system, and every nodes has his folder to pick its binaries out. The problem is that the cluster jobs uses the wrong python (the real environment on that nodes) and not bcbios anaconda python. And so I get an ImportError, undefined symbol: PyUnicodeUCS2_AsASCIIString.

Below you find the running command and attached you find a part of the error.

As you’ll see in the attached file, its using /opt/software/python2.7.5/lib/python2.7/site-packages/numpy/core/multiarray.so and not the version of /home/myname/local/share/bcbio/anaconda/.

Command: /home/myname/local/share/bcbio/anaconda/bin/python /home/myname/local/bin/bcbio_nextgen.py ../config/XXX_SampleInfo-merged.yaml -t ipython -n 72 -s torque -q Development --tag dev -r account=myname

error_torque.txt

Thank you in advance!