auto-sklearn: Unable to process large data set??

I have a data set which is more than 100k records. When I try to fit into AutoSklearnRegressor, it always thrown an warning. It seems causing that I cannot get a expected output.

However, if number of records is small enough (says less than 20k), it can execute without any warming/ error. May you advise this situation? I am using 0.2 version

Sample code

import autosklearn.regression
import numpy as np

x = np.random.randint(2, size=(250000,100))
y = np.random.randint(2, size=(250000,1))


feature_types = (['numerical'] * 100)
automl = autosklearn.regression.AutoSklearnRegressor(
    time_left_for_this_task=120, per_run_time_limit=30
)
automl.fit(x, y, dataset_name='boston', feat_type=feature_types)

The exception is

WARNING] [2017-10-26 11:21:28,580:AutoMLSMBO(1)::boston] Could not find meta-data directory /home/anaconda3/lib/python3.5/site-packages/autosklearn/metalearning/files/r2_regression_dense

/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal

About this issue

Original URL
State: closed
Created 7 years ago
Reactions: 1
Comments: 17 (8 by maintainers)

Most upvoted comments

2017-11-05 01:50:48.096598 start
[WARNING] [2017-11-05 01:50:49,322:AutoMLSMBO(1)::boston] Could not find meta-data directory /home/anaconda3/lib/python3.5/site-packages/autosklearn/metalearning/files/r2_regression_dense

/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():

/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():

/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():

/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run2
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():

You are already timing task: index_run2
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():

/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
You are already timing task: index_run2
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():

/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():

You are already timing task: index_run3
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():

/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: divide by zero encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:737: RuntimeWarning: invalid value encountered in true_divide
  (1. - dataset_minimum))
/home/anaconda3/lib/python3.5/site-packages/autosklearn/smbo.py:738: RuntimeWarning: invalid value encountered in greater
  Y_cfg[:, 0][Y_cfg[:, 0] > 2] = 2
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
  return (self.a < x) & (x < self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:1735: RuntimeWarning: invalid value encountered in greater_equal
  cond2 = (x >= self.b) & cond0
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in greater_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/scipy/stats/_distn_infrastructure.py:876: RuntimeWarning: invalid value encountered in less_equal
  return (self.a <= x) & (x <= self.b)
/home/anaconda3/lib/python3.5/site-packages/smac/optimizer/acquisition.py:164: RuntimeWarning: invalid value encountered in less
  if (f < 0).any():

---------------------------------------------------------------------------
ValueError                                Traceback (most recent call last)
<ipython-input-1-439ee93732dd> in <module>()
     13 )
     14 
---> 15 automl.fit(x, y, dataset_name='boston', feat_type=feature_types)

/home/anaconda3/lib/python3.5/site-packages/autosklearn/estimators.py in fit(self, X, y, metric, feat_type, dataset_name)
    487         return super(AutoSklearnRegressor, self).fit(X=X, y=y, metric=metric,
    488                                                      feat_type=feat_type,
--> 489                                                      dataset_name=dataset_name)
    490 
    491     def predict(self, X, batch_size=None, n_jobs=1):

/home/anaconda3/lib/python3.5/site-packages/autosklearn/estimators.py in fit(self, *args, **kwargs)
    302     def fit(self, *args, **kwargs):
    303         self._automl = self.build_automl()
--> 304         super(AutoSklearnEstimator, self).fit(*args, **kwargs)
    305 
    306     def fit_ensemble(self, y, task=None, metric=None, precision='32',

/home/anaconda3/lib/python3.5/site-packages/autosklearn/estimators.py in fit(self, *args, **kwargs)
     21 
     22     def fit(self, *args, **kwargs):
---> 23         self._automl.fit(*args, **kwargs)
     24 
     25     def refit(self, X, y):

/home/anaconda3/lib/python3.5/site-packages/autosklearn/estimators.py in fit(self, X, y, metric, feat_type, dataset_name)
    619             metric = r2
    620         return self._automl.fit(X=X, y=y, task=REGRESSION, metric=metric,
--> 621                                 feat_type=feat_type, dataset_name=dataset_name)

/home/anaconda3/lib/python3.5/site-packages/autosklearn/automl.py in fit(self, X, y, task, metric, feat_type, dataset_name)
    193                                             dataset_name=dataset_name)
    194 
--> 195         return self._fit(loaded_data_manager, metric)
    196 
    197     def fit_automl_dataset(self, dataset, metric):

/home/anaconda3/lib/python3.5/site-packages/autosklearn/automl.py in _fit(self, datamanager, metric)
    463 
    464         self._proc_ensemble = None
--> 465         self._load_models()
    466 
    467         return self

/home/anaconda3/lib/python3.5/site-packages/autosklearn/automl.py in _load_models(self)
    628         if self.ensemble_:
    629             identifiers = self.ensemble_.identifiers_
--> 630             self.models_ = self._backend.load_models_by_identifiers(identifiers)
    631             if len(self.models_) == 0 and self._resampling_strategy not in \
    632                     ['partial-cv', 'partial-cv-iterative-fit']:

/home/anaconda3/lib/python3.5/site-packages/autosklearn/util/backend.py in load_models_by_identifiers(self, identifiers)
    311         for identifier in identifiers:
    312             seed, idx = identifier
--> 313             models[identifier] = self.load_model_by_seed_and_id(seed, idx)
    314 
    315         return models

/home/anaconda3/lib/python3.5/site-packages/autosklearn/util/backend.py in load_model_by_seed_and_id(self, seed, idx)
    321         model_file_path = os.path.join(model_directory, model_file_name)
    322         with open(model_file_path, 'rb') as fh:
--> 323             return pickle.load(fh)
    324 
    325     def get_ensemble_dir(self):

/home/anaconda3/lib/python3.5/site-packages/sklearn/cluster/__init__.py in <module>()
      4 """
      5 
----> 6 from .spectral import spectral_clustering, SpectralClustering
      7 from .mean_shift_ import (mean_shift, MeanShift,
      8                           estimate_bandwidth, get_bin_seeds)

/home/anaconda3/lib/python3.5/site-packages/sklearn/cluster/spectral.py in <module>()
     15 from ..metrics.pairwise import pairwise_kernels
     16 from ..neighbors import kneighbors_graph
---> 17 from ..manifold import spectral_embedding
     18 from .k_means_ import k_means
     19 

/home/anaconda3/lib/python3.5/site-packages/sklearn/manifold/__init__.py in <module>()
      7 from .mds import MDS, smacof
      8 from .spectral_embedding_ import SpectralEmbedding, spectral_embedding
----> 9 from .t_sne import TSNE
     10 
     11 __all__ = ['locally_linear_embedding', 'LocallyLinearEmbedding', 'Isomap',

/home/anaconda3/lib/python3.5/site-packages/sklearn/manifold/t_sne.py in <module>()
     23 from ..metrics.pairwise import pairwise_distances
     24 from . import _utils
---> 25 from . import _barnes_hut_tsne
     26 from ..externals.six import string_types
     27 from ..utils import deprecated

sklearn/neighbors/quad_tree.pxd in init sklearn.manifold._barnes_hut_tsne()

sklearn/tree/_tree.pxd in init sklearn.neighbors.quad_tree()

ValueError: sklearn.tree._tree.TreeBuilder has the wrong size, try recompiling. Expected 72, got 80

mkcedward on Nov 4, 2017

import autosklearn.regression
import numpy as np
import datetime

x = np.random.randint(2, size=(250000,100))
y = np.random.randint(2, size=(250000,1))

print(datetime.datetime.now(), 'start')
feature_types = (['numerical'] * 100)

automl = autosklearn.regression.AutoSklearnRegressor(
    time_left_for_this_task=3000, per_run_time_limit=600
)

automl.fit(x, y, dataset_name='boston', feat_type=feature_types)

Tried the above code, but the warming is thrown after 1 ~ 2 mins.

mkcedward on Oct 26, 2017