arbor: [0.2.2] -D_GLIBCXX_ASSERTIONS unit test crash + performance issues
I’m seeing a crash while running the unit tests:
+ LD_LIBRARY_PATH=:./lib/
+ ./bin/unit
[==========] Running 697 tests from 116 test cases.
[----------] Global test environment set-up.
[----------] 14 tests from algorithms
[ RUN ] algorithms.sum
[ OK ] algorithms.sum (0 ms)
[ RUN ] algorithms.make_index
[ OK ] algorithms.make_index (0 ms)
[ RUN ] algorithms.minimal_degree
[ OK ] algorithms.minimal_degree (0 ms)
[ RUN ] algorithms.is_strictly_monotonic_increasing
[ OK ] algorithms.is_strictly_monotonic_increasing (0 ms)
[ RUN ] algorithms.is_strictly_monotonic_decreasing
[ OK ] algorithms.is_strictly_monotonic_decreasing (0 ms)
[ RUN ] algorithms.all_positive
[ OK ] algorithms.all_positive (0 ms)
[ RUN ] algorithms.all_negative
[ OK ] algorithms.all_negative (0 ms)
[ RUN ] algorithms.has_contiguous_compartments
[ OK ] algorithms.has_contiguous_compartments (0 ms)
[ RUN ] algorithms.is_unique
[ OK ] algorithms.is_unique (0 ms)
[ RUN ] algorithms.child_count
[ OK ] algorithms.child_count (0 ms)
[ RUN ] algorithms.branches
[ OK ] algorithms.branches (0 ms)
[ RUN ] algorithms.index_into
[ OK ] algorithms.index_into (0 ms)
[ RUN ] algorithms.binary_find
[ OK ] algorithms.binary_find (0 ms)
[ RUN ] algorithms.binary_find_convert
[ OK ] algorithms.binary_find_convert (0 ms)
[----------] 14 tests from algorithms (0 ms total)
[----------] 12 tests from any
[ RUN ] any.copy_construction
[ OK ] any.copy_construction (0 ms)
[ RUN ] any.move_construction
[ OK ] any.move_construction (0 ms)
[ RUN ] any.type
[ OK ] any.type (0 ms)
[ RUN ] any.swap
[ OK ] any.swap (0 ms)
[ RUN ] any.any_cast_ptr
[ OK ] any.any_cast_ptr (0 ms)
[ RUN ] any.any_cast_ref
[ OK ] any.any_cast_ref (0 ms)
[ RUN ] any.any_cast_rvalue
[ OK ] any.any_cast_rvalue (0 ms)
[ RUN ] any.std_swap
[ OK ] any.std_swap (0 ms)
[ RUN ] any.assignment_from_lvalue
[ OK ] any.assignment_from_lvalue (0 ms)
[ RUN ] any.assignment_from_rvalue
[ OK ] any.assignment_from_rvalue (0 ms)
[ RUN ] any.assignment_from_value
[ OK ] any.assignment_from_value (0 ms)
[ RUN ] any.make_any
[ OK ] any.make_any (0 ms)
[----------] 12 tests from any (0 ms total)
[----------] 4 tests from any_ptr
[ RUN ] any_ptr.ctor_and_assign
[ OK ] any_ptr.ctor_and_assign (0 ms)
[ RUN ] any_ptr.ordering
[ OK ] any_ptr.ordering (0 ms)
[ RUN ] any_ptr.as_and_type
[ OK ] any_ptr.as_and_type (0 ms)
[ RUN ] any_ptr.any_cast
[ OK ] any_ptr.any_cast (0 ms)
[----------] 4 tests from any_ptr (0 ms total)
[----------] 1 test from backends
[ RUN ] backends.gpu_test
[ OK ] backends.gpu_test (0 ms)
[----------] 1 test from backends (0 ms total)
[----------] 3 tests from double_buffer
[ RUN ] double_buffer.exchange_and_get
[ OK ] double_buffer.exchange_and_get (0 ms)
[ RUN ] double_buffer.assign_get_other
[ OK ] double_buffer.assign_get_other (0 ms)
[ RUN ] double_buffer.non_pod
[ OK ] double_buffer.non_pod (0 ms)
[----------] 3 tests from double_buffer (0 ms total)
[----------] 6 tests from dry_run_context
[ RUN ] dry_run_context.construct_distributed_context
[ OK ] dry_run_context.construct_distributed_context (0 ms)
[ RUN ] dry_run_context.size_rank
[ OK ] dry_run_context.size_rank (0 ms)
[ RUN ] dry_run_context.minmax
[ OK ] dry_run_context.minmax (0 ms)
[ RUN ] dry_run_context.sum
[ OK ] dry_run_context.sum (0 ms)
[ RUN ] dry_run_context.gather_spikes
[ OK ] dry_run_context.gather_spikes (0 ms)
[ RUN ] dry_run_context.gather_gids
[ OK ] dry_run_context.gather_gids (0 ms)
[----------] 6 tests from dry_run_context (0 ms total)
[----------] 3 tests from compartments
[ RUN ] compartments.div_ends
[ OK ] compartments.div_ends (0 ms)
[ RUN ] compartments.div_sample
[ OK ] compartments.div_sample (1 ms)
[ RUN ] compartments.div_integrator
[ OK ] compartments.div_integrator (0 ms)
[----------] 3 tests from compartments (1 ms total)
[----------] 5 tests from int_types/counter_test/0, where TypeParam = signed char
[ RUN ] int_types/counter_test/0.value
[ OK ] int_types/counter_test/0.value (0 ms)
[ RUN ] int_types/counter_test/0.compare
[ OK ] int_types/counter_test/0.compare (0 ms)
[ RUN ] int_types/counter_test/0.arithmetic
[ OK ] int_types/counter_test/0.arithmetic (0 ms)
[ RUN ] int_types/counter_test/0.iterator_traits
[ OK ] int_types/counter_test/0.iterator_traits (0 ms)
[ RUN ] int_types/counter_test/0.iterator_functions
[ OK ] int_types/counter_test/0.iterator_functions (0 ms)
[----------] 5 tests from int_types/counter_test/0 (0 ms total)
[----------] 5 tests from int_types/counter_test/1, where TypeParam = unsigned char
[ RUN ] int_types/counter_test/1.value
[ OK ] int_types/counter_test/1.value (0 ms)
[ RUN ] int_types/counter_test/1.compare
[ OK ] int_types/counter_test/1.compare (0 ms)
[ RUN ] int_types/counter_test/1.arithmetic
[ OK ] int_types/counter_test/1.arithmetic (0 ms)
[ RUN ] int_types/counter_test/1.iterator_traits
[ OK ] int_types/counter_test/1.iterator_traits (0 ms)
[ RUN ] int_types/counter_test/1.iterator_functions
[ OK ] int_types/counter_test/1.iterator_functions (0 ms)
[----------] 5 tests from int_types/counter_test/1 (0 ms total)
[----------] 5 tests from int_types/counter_test/2, where TypeParam = short
[ RUN ] int_types/counter_test/2.value
[ OK ] int_types/counter_test/2.value (0 ms)
[ RUN ] int_types/counter_test/2.compare
[ OK ] int_types/counter_test/2.compare (0 ms)
[ RUN ] int_types/counter_test/2.arithmetic
[ OK ] int_types/counter_test/2.arithmetic (0 ms)
[ RUN ] int_types/counter_test/2.iterator_traits
[ OK ] int_types/counter_test/2.iterator_traits (0 ms)
[ RUN ] int_types/counter_test/2.iterator_functions
[ OK ] int_types/counter_test/2.iterator_functions (0 ms)
[----------] 5 tests from int_types/counter_test/2 (0 ms total)
[----------] 5 tests from int_types/counter_test/3, where TypeParam = unsigned short
[ RUN ] int_types/counter_test/3.value
[ OK ] int_types/counter_test/3.value (0 ms)
[ RUN ] int_types/counter_test/3.compare
[ OK ] int_types/counter_test/3.compare (0 ms)
[ RUN ] int_types/counter_test/3.arithmetic
[ OK ] int_types/counter_test/3.arithmetic (0 ms)
[ RUN ] int_types/counter_test/3.iterator_traits
[ OK ] int_types/counter_test/3.iterator_traits (0 ms)
[ RUN ] int_types/counter_test/3.iterator_functions
[ OK ] int_types/counter_test/3.iterator_functions (0 ms)
[----------] 5 tests from int_types/counter_test/3 (0 ms total)
[----------] 5 tests from int_types/counter_test/4, where TypeParam = int
[ RUN ] int_types/counter_test/4.value
[ OK ] int_types/counter_test/4.value (0 ms)
[ RUN ] int_types/counter_test/4.compare
[ OK ] int_types/counter_test/4.compare (0 ms)
[ RUN ] int_types/counter_test/4.arithmetic
[ OK ] int_types/counter_test/4.arithmetic (0 ms)
[ RUN ] int_types/counter_test/4.iterator_traits
[ OK ] int_types/counter_test/4.iterator_traits (0 ms)
[ RUN ] int_types/counter_test/4.iterator_functions
[ OK ] int_types/counter_test/4.iterator_functions (0 ms)
[----------] 5 tests from int_types/counter_test/4 (0 ms total)
[----------] 5 tests from int_types/counter_test/5, where TypeParam = unsigned int
[ RUN ] int_types/counter_test/5.value
[ OK ] int_types/counter_test/5.value (0 ms)
[ RUN ] int_types/counter_test/5.compare
[ OK ] int_types/counter_test/5.compare (0 ms)
[ RUN ] int_types/counter_test/5.arithmetic
[ OK ] int_types/counter_test/5.arithmetic (0 ms)
[ RUN ] int_types/counter_test/5.iterator_traits
[ OK ] int_types/counter_test/5.iterator_traits (0 ms)
[ RUN ] int_types/counter_test/5.iterator_functions
[ OK ] int_types/counter_test/5.iterator_functions (0 ms)
[----------] 5 tests from int_types/counter_test/5 (0 ms total)
[----------] 5 tests from int_types/counter_test/6, where TypeParam = unsigned long
[ RUN ] int_types/counter_test/6.value
[ OK ] int_types/counter_test/6.value (0 ms)
[ RUN ] int_types/counter_test/6.compare
[ OK ] int_types/counter_test/6.compare (0 ms)
[ RUN ] int_types/counter_test/6.arithmetic
[ OK ] int_types/counter_test/6.arithmetic (0 ms)
[ RUN ] int_types/counter_test/6.iterator_traits
[ OK ] int_types/counter_test/6.iterator_traits (0 ms)
[ RUN ] int_types/counter_test/6.iterator_functions
[ OK ] int_types/counter_test/6.iterator_functions (0 ms)
[----------] 5 tests from int_types/counter_test/6 (0 ms total)
[----------] 5 tests from int_types/counter_test/7, where TypeParam = long
[ RUN ] int_types/counter_test/7.value
[ OK ] int_types/counter_test/7.value (0 ms)
[ RUN ] int_types/counter_test/7.compare
[ OK ] int_types/counter_test/7.compare (0 ms)
[ RUN ] int_types/counter_test/7.arithmetic
[ OK ] int_types/counter_test/7.arithmetic (0 ms)
[ RUN ] int_types/counter_test/7.iterator_traits
[ OK ] int_types/counter_test/7.iterator_traits (0 ms)
[ RUN ] int_types/counter_test/7.iterator_functions
[ OK ] int_types/counter_test/7.iterator_functions (0 ms)
[----------] 5 tests from int_types/counter_test/7 (0 ms total)
[----------] 7 tests from cycle_iterator
[ RUN ] cycle_iterator.construct
[ OK ] cycle_iterator.construct (0 ms)
[ RUN ] cycle_iterator.increment
[ OK ] cycle_iterator.increment (0 ms)
[ RUN ] cycle_iterator.decrement
[ OK ] cycle_iterator.decrement (0 ms)
[ RUN ] cycle_iterator.carray
[ OK ] cycle_iterator.carray (0 ms)
[ RUN ] cycle_iterator.sentinel
[ OK ] cycle_iterator.sentinel (0 ms)
[ RUN ] cycle_iterator.difference
[ OK ] cycle_iterator.difference (0 ms)
[ RUN ] cycle_iterator.order
[ OK ] cycle_iterator.order (0 ms)
[----------] 7 tests from cycle_iterator (0 ms total)
[----------] 3 tests from cycle
[ RUN ] cycle.cyclic_view
[ OK ] cycle.cyclic_view (0 ms)
[ RUN ] cycle.cyclic_view_initlist
[ OK ] cycle.cyclic_view_initlist (0 ms)
[ RUN ] cycle.cyclic_view_sentinel
[ OK ] cycle.cyclic_view_sentinel (0 ms)
[----------] 3 tests from cycle (0 ms total)
[----------] 4 tests from domain_decomposition
[ RUN ] domain_decomposition.homogenous_population
[ OK ] domain_decomposition.homogenous_population (1 ms)
[ RUN ] domain_decomposition.heterogenous_population
[ OK ] domain_decomposition.heterogenous_population (0 ms)
[ RUN ] domain_decomposition.hints
[ OK ] domain_decomposition.hints (0 ms)
[ RUN ] domain_decomposition.compulsory_groups
[ OK ] domain_decomposition.compulsory_groups (0 ms)
[----------] 4 tests from domain_decomposition (1 ms total)
[----------] 2 tests from either
[ RUN ] either.basic
[ OK ] either.basic (0 ms)
[ RUN ] either.no_copy
[ OK ] either.no_copy (0 ms)
[----------] 2 tests from either (0 ms total)
[----------] 1 test from event_binner
[ RUN ] event_binner.with_min
[ OK ] event_binner.with_min (0 ms)
[----------] 1 test from event_binner (0 ms total)
[----------] 3 tests from mc_event_delivery
[ RUN ] mc_event_delivery.one_cell_per_group
[ OK ] mc_event_delivery.one_cell_per_group (1 ms)
[ RUN ] mc_event_delivery.two_interleaved_groups
[ OK ] mc_event_delivery.two_interleaved_groups (0 ms)
[ RUN ] mc_event_delivery.gj_reordered
[ OK ] mc_event_delivery.gj_reordered (0 ms)
[----------] 3 tests from mc_event_delivery (1 ms total)
[----------] 3 tests from event_generators
[ RUN ] event_generators.regular
[ OK ] event_generators.regular (0 ms)
[ RUN ] event_generators.seq
[ OK ] event_generators.seq (0 ms)
[ RUN ] event_generators.poisson
[ OK ] event_generators.poisson (0 ms)
[----------] 3 tests from event_generators (0 ms total)
[----------] 4 tests from event_queue
[ RUN ] event_queue.push
[ OK ] event_queue.push (0 ms)
[ RUN ] event_queue.pop_if_before
[ OK ] event_queue.pop_if_before (0 ms)
[ RUN ] event_queue.pop_if_not_after
[ OK ] event_queue.pop_if_not_after (0 ms)
[ RUN ] event_queue.minimal_event_impl
[ OK ] event_queue.minimal_event_impl (0 ms)
[----------] 4 tests from event_queue (0 ms total)
[----------] 5 tests from filter
[ RUN ] filter.const_regular
[ OK ] filter.const_regular (0 ms)
[ RUN ] filter.const_sentinel
[ OK ] filter.const_sentinel (0 ms)
[ RUN ] filter.modify_regular
[ OK ] filter.modify_regular (0 ms)
[ RUN ] filter.modify_sentinel
[ OK ] filter.modify_sentinel (0 ms)
[ RUN ] filter.laziness
[ OK ] filter.laziness (0 ms)
[----------] 5 tests from filter (0 ms total)
[----------] 9 tests from fvm_layout
[ RUN ] fvm_layout.topology
[ OK ] fvm_layout.topology (0 ms)
[ RUN ] fvm_layout.area
[ OK ] fvm_layout.area (0 ms)
[ RUN ] fvm_layout.mech_index
[ OK ] fvm_layout.mech_index (0 ms)
[ RUN ] fvm_layout.coalescing_synapses
[ OK ] fvm_layout.coalescing_synapses (1 ms)
[ RUN ] fvm_layout.synapse_targets
[ OK ] fvm_layout.synapse_targets (0 ms)
[ RUN ] fvm_layout.density_norm_area
[ OK ] fvm_layout.density_norm_area (0 ms)
[ RUN ] fvm_layout.valence_verify
[ OK ] fvm_layout.valence_verify (0 ms)
[ RUN ] fvm_layout.ion_weights
[ OK ] fvm_layout.ion_weights (0 ms)
[ RUN ] fvm_layout.revpot
[ OK ] fvm_layout.revpot (0 ms)
[----------] 9 tests from fvm_layout (1 ms total)
[----------] 12 tests from fvm_lowered
[ RUN ] fvm_lowered.matrix_init
[ OK ] fvm_lowered.matrix_init (0 ms)
[ RUN ] fvm_lowered.target_handles
[ OK ] fvm_lowered.target_handles (1 ms)
[ RUN ] fvm_lowered.stimulus
[ OK ] fvm_lowered.stimulus (0 ms)
[ RUN ] fvm_lowered.derived_mechs
[ OK ] fvm_lowered.derived_mechs (30 ms)
[ RUN ] fvm_lowered.read_valence
[ OK ] fvm_lowered.read_valence (0 ms)
[ RUN ] fvm_lowered.ionic_currents
[ OK ] fvm_lowered.ionic_currents (0 ms)
[ RUN ] fvm_lowered.point_ionic_current
[ OK ] fvm_lowered.point_ionic_current (0 ms)
[ RUN ] fvm_lowered.weighted_write_ion
[ OK ] fvm_lowered.weighted_write_ion (0 ms)
[ RUN ] fvm_lowered.gj_coords_simple
[ OK ] fvm_lowered.gj_coords_simple (0 ms)
[ RUN ] fvm_lowered.gj_coords_complex
[ OK ] fvm_lowered.gj_coords_complex (0 ms)
[ RUN ] fvm_lowered.cell_group_gj
[ OK ] fvm_lowered.cell_group_gj (0 ms)
[ RUN ] fvm_lowered.integration_domains
[ OK ] fvm_lowered.integration_domains (0 ms)
[----------] 12 tests from fvm_lowered (32 ms total)
[----------] 5 tests from glob
[ RUN ] glob.pattern
[ OK ] glob.pattern (0 ms)
[ RUN ] glob.simple_patterns
[ OK ] glob.simple_patterns (0 ms)
[ RUN ] glob.literals
[ OK ] glob.literals (0 ms)
[ RUN ] glob.multidir
[ OK ] glob.multidir (0 ms)
[ RUN ] glob.dots
[ OK ] glob.dots (0 ms)
[----------] 5 tests from glob (0 ms total)
[----------] 3 tests from mc_cell_group
[ RUN ] mc_cell_group.get_kind
[ OK ] mc_cell_group.get_kind (0 ms)
[ RUN ] mc_cell_group.test
[ OK ] mc_cell_group.test (20 ms)
[ RUN ] mc_cell_group.sources
[ OK ] mc_cell_group.sources (0 ms)
[----------] 3 tests from mc_cell_group (20 ms total)
[----------] 2 tests from mech_kinetic
[ RUN ] mech_kinetic.kintetic_1_conserve
[ OK ] mech_kinetic.kintetic_1_conserve (0 ms)
[ RUN ] mech_kinetic.kintetic_2_conserve
[ OK ] mech_kinetic.kintetic_2_conserve (0 ms)
[----------] 2 tests from mech_kinetic (0 ms total)
[----------] 1 test from mech_linear
[ RUN ] mech_linear.linear
[ OK ] mech_linear.linear (1 ms)
[----------] 1 test from mech_linear (1 ms total)
[----------] 4 tests from lexcmp_def
[ RUN ] lexcmp_def.one
[ OK ] lexcmp_def.one (0 ms)
[ RUN ] lexcmp_def.three
[ OK ] lexcmp_def.three (0 ms)
[ RUN ] lexcmp_def.refmemfn
[ OK ] lexcmp_def.refmemfn (0 ms)
[ RUN ] lexcmp_def.proxy
[ OK ] lexcmp_def.proxy (0 ms)
[----------] 4 tests from lexcmp_def (0 ms total)
[----------] 3 tests from lif_cell_group
[ RUN ] lif_cell_group.recipe
[ OK ] lif_cell_group.recipe (0 ms)
[ RUN ] lif_cell_group.spikes
[ OK ] lif_cell_group.spikes (2 ms)
[ RUN ] lif_cell_group.ring
[ OK ] lif_cell_group.ring (6 ms)
[----------] 3 tests from lif_cell_group (8 ms total)
[----------] 5 tests from maputil
[ RUN ] maputil.keys
[ OK ] maputil.keys (0 ms)
[ RUN ] maputil.is_assoc
[ OK ] maputil.is_assoc (0 ms)
[ RUN ] maputil.value_by_key_map
[ OK ] maputil.value_by_key_map (0 ms)
[ RUN ] maputil.value_by_key_sequence
[ OK ] maputil.value_by_key_sequence (0 ms)
[ RUN ] maputil.binary_search_index
[ OK ] maputil.binary_search_index (0 ms)
[----------] 5 tests from maputil (0 ms total)
[----------] 4 tests from mask_stream
[ RUN ] mask_stream.nomask
[ OK ] mask_stream.nomask (0 ms)
[ RUN ] mask_stream.mask
[ OK ] mask_stream.mask (0 ms)
[ RUN ] mask_stream.mask_multi
[ OK ] mask_stream.mask_multi (0 ms)
[ RUN ] mask_stream.fmt
[ OK ] mask_stream.fmt (0 ms)
[----------] 4 tests from mask_stream (0 ms total)
[----------] 8 tests from math
[ RUN ] math.pi
[ OK ] math.pi (0 ms)
[ RUN ] math.lerp
[ OK ] math.lerp (0 ms)
[ RUN ] math.frustrum
[ OK ] math.frustrum (0 ms)
[ RUN ] math.infinity
[ OK ] math.infinity (0 ms)
[ RUN ] math.signum
[ OK ] math.signum (0 ms)
[ RUN ] math.next_pow2
[ OK ] math.next_pow2 (0 ms)
[ RUN ] math.round_up
[ OK ] math.round_up (0 ms)
[ RUN ] math.exprelr
[ OK ] math.exprelr (0 ms)
[----------] 8 tests from math (0 ms total)
[----------] 7 tests from quaternion
[ RUN ] quaternion.ctor
[ OK ] quaternion.ctor (0 ms)
[ RUN ] quaternion.assign
[ OK ] quaternion.assign (0 ms)
[ RUN ] quaternion.equality
[ OK ] quaternion.equality (0 ms)
[ RUN ] quaternion.unaryop
[ OK ] quaternion.unaryop (0 ms)
[ RUN ] quaternion.binop
[ OK ] quaternion.binop (0 ms)
[ RUN ] quaternion.assignop
[ OK ] quaternion.assignop (0 ms)
[ RUN ] quaternion.rotate
[ OK ] quaternion.rotate (0 ms)
[----------] 7 tests from quaternion (0 ms total)
[----------] 4 tests from matrix
[ RUN ] matrix.construct_from_parent_only
[ OK ] matrix.construct_from_parent_only (0 ms)
[ RUN ] matrix.solve_host
[ OK ] matrix.solve_host (17 ms)
[ RUN ] matrix.zero_diagonal
[ OK ] matrix.zero_diagonal (0 ms)
[ RUN ] matrix.zero_diagonal_assembled
[ OK ] matrix.zero_diagonal_assembled (0 ms)
[----------] 4 tests from matrix (17 ms total)
[----------] 6 tests from cable_cell
[ RUN ] cable_cell.soma
[ OK ] cable_cell.soma (0 ms)
[ RUN ] cable_cell.add_segment
[ OK ] cable_cell.add_segment (0 ms)
[ RUN ] cable_cell.multiple_cables
[ OK ] cable_cell.multiple_cables (0 ms)
[ RUN ] cable_cell.unbranched_chain
[ OK ] cable_cell.unbranched_chain (0 ms)
[ RUN ] cable_cell.clone
[ OK ] cable_cell.clone (0 ms)
[ RUN ] cable_cell.get_kind
[ OK ] cable_cell.get_kind (0 ms)
[----------] 6 tests from cable_cell (0 ms total)
[----------] 1 test from mech_temperature
[ RUN ] mech_temperature.celsius
[ OK ] mech_temperature.celsius (0 ms)
[----------] 1 test from mech_temperature (0 ms total)
[----------] 9 tests from mechcat
[ RUN ] mechcat.fingerprint
[ OK ] mechcat.fingerprint (0 ms)
[ RUN ] mechcat.derived_info
[ OK ] mechcat.derived_info (0 ms)
[ RUN ] mechcat.queries
[ OK ] mechcat.queries (0 ms)
[ RUN ] mechcat.remove
[ OK ] mechcat.remove (0 ms)
[ RUN ] mechcat.instance
[ OK ] mechcat.instance (0 ms)
[ RUN ] mechcat.instantiate
[ OK ] mechcat.instantiate (0 ms)
[ RUN ] mechcat.bad_ion_rename
[ OK ] mechcat.bad_ion_rename (0 ms)
[ RUN ] mechcat.implicit_deriv
[ OK ] mechcat.implicit_deriv (0 ms)
[ RUN ] mechcat.copy
[ OK ] mechcat.copy (0 ms)
[----------] 9 tests from mechcat (0 ms total)
[----------] 6 tests from merge_events
[ RUN ] merge_events.empty
[ OK ] merge_events.empty (0 ms)
[ RUN ] merge_events.no_overlap
[ OK ] merge_events.no_overlap (0 ms)
[ RUN ] merge_events.overlap
[ OK ] merge_events.overlap (0 ms)
[ RUN ] merge_events.X
[ OK ] merge_events.X (0 ms)
[ RUN ] merge_events.tourney_seq
[ OK ] merge_events.tourney_seq (0 ms)
[ RUN ] merge_events.tourney_poisson
[ OK ] merge_events.tourney_poisson (4 ms)
[----------] 6 tests from merge_events (4 ms total)
[----------] 3 tests from multi_event_stream
[ RUN ] multi_event_stream.init
[ OK ] multi_event_stream.init (0 ms)
[ RUN ] multi_event_stream.mark
[ OK ] multi_event_stream.mark (0 ms)
[ RUN ] multi_event_stream.time_if_before
[ OK ] multi_event_stream.time_if_before (0 ms)
[----------] 3 tests from multi_event_stream (0 ms total)
[----------] 15 tests from optional
[ RUN ] optional.ctors
[ OK ] optional.ctors (0 ms)
[ RUN ] optional.unset_throw
[ OK ] optional.unset_throw (0 ms)
[ RUN ] optional.deref
[ OK ] optional.deref (0 ms)
[ RUN ] optional.ctor_conv
[ OK ] optional.ctor_conv (0 ms)
[ RUN ] optional.ctor_ref
[ OK ] optional.ctor_ref (0 ms)
[ RUN ] optional.assign_returns
[ OK ] optional.assign_returns (0 ms)
[ RUN ] optional.assign_reference
[ OK ] optional.assign_reference (0 ms)
[ RUN ] optional.ctor_nomove
[ OK ] optional.ctor_nomove (0 ms)
[ RUN ] optional.ctor_nocopy
[ OK ] optional.ctor_nocopy (0 ms)
[ RUN ] optional.value_or
[ OK ] optional.value_or (0 ms)
[ RUN ] optional.ref_value_or
[ OK ] optional.ref_value_or (0 ms)
[ RUN ] optional.void
[ OK ] optional.void (0 ms)
[ RUN ] optional.conversion
[ OK ] optional.conversion (0 ms)
[ RUN ] optional.just
[ OK ] optional.just (0 ms)
[ RUN ] optional.emplace
[ OK ] optional.emplace (0 ms)
[----------] 15 tests from optional (0 ms total)
[----------] 1 test from mechanism_desc
[ RUN ] mechanism_desc.setting
[ OK ] mechanism_desc.setting (0 ms)
[----------] 1 test from mechanism_desc (0 ms total)
[----------] 5 tests from morphology
[ RUN ] morphology.point_props
[ OK ] morphology.point_props (0 ms)
[ RUN ] morphology.branches_from_parent_index
[ OK ] morphology.branches_from_parent_index (0 ms)
[ RUN ] morphology.construction
[ OK ] morphology.construction (0 ms)
[ RUN ] morphology.branches
[ OK ] morphology.branches (0 ms)
[ RUN ] morphology.swc
[ OK ] morphology.swc (2 ms)
[----------] 5 tests from morphology (2 ms total)
[----------] 1 test from sample_tree
[ RUN ] sample_tree.properties
[ OK ] sample_tree.properties (0 ms)
[----------] 1 test from sample_tree (0 ms total)
[----------] 4 tests from padded_vector
[ RUN ] padded_vector.alignment
[ OK ] padded_vector.alignment (0 ms)
[ RUN ] padded_vector.allocator_constraints
[ OK ] padded_vector.allocator_constraints (0 ms)
[ RUN ] padded_vector.allocator_propagation
[ OK ] padded_vector.allocator_propagation (0 ms)
[ RUN ] padded_vector.instrumented
[ OK ] padded_vector.instrumented (0 ms)
[----------] 4 tests from padded_vector (0 ms total)
[----------] 7 tests from partition
[ RUN ] partition.partition_view
[ OK ] partition.partition_view (0 ms)
[ RUN ] partition.short_partition_view
[ OK ] partition.short_partition_view (0 ms)
[ RUN ] partition.check_monotonicity
[ OK ] partition.check_monotonicity (0 ms)
[ RUN ] partition.partition_view_find
[ OK ] partition.partition_view_find (0 ms)
[ RUN ] partition.partition_view_non_numeric
[ OK ] partition.partition_view_non_numeric (0 ms)
[ RUN ] partition.make_partition_in_place
[ OK ] partition.make_partition_in_place (0 ms)
[ RUN ] partition.make_partition
[ OK ] partition.make_partition (0 ms)
[----------] 7 tests from partition (0 ms total)
[----------] 5 tests from partition_by_constraint
[ RUN ] partition_by_constraint.partition_contiguous
[ OK ] partition_by_constraint.partition_contiguous (0 ms)
[ RUN ] partition_by_constraint.partition_constant
[ OK ] partition_by_constraint.partition_constant (0 ms)
[ RUN ] partition_by_constraint.partition_independent
[ OK ] partition_by_constraint.partition_independent (0 ms)
[ RUN ] partition_by_constraint.partition_none
[ OK ] partition_by_constraint.partition_none (0 ms)
[ RUN ] partition_by_constraint.partition_random
[ OK ] partition_by_constraint.partition_random (0 ms)
[----------] 5 tests from partition_by_constraint (0 ms total)
[----------] 17 tests from path
[ RUN ] path.posix_ctor
[ OK ] path.posix_ctor (0 ms)
[ RUN ] path.posix_native
[ OK ] path.posix_native (0 ms)
[ RUN ] path.posix_generic
[ OK ] path.posix_generic (0 ms)
[ RUN ] path.posix_append
[ OK ] path.posix_append (0 ms)
[ RUN ] path.compare
[ OK ] path.compare (0 ms)
[ RUN ] path.posix_concat
[ OK ] path.posix_concat (0 ms)
[ RUN ] path.posix_absrel_query
[ OK ] path.posix_absrel_query (0 ms)
[ RUN ] path.posix_swap
[ OK ] path.posix_swap (0 ms)
[ RUN ] path.filename
[ OK ] path.filename (0 ms)
[ RUN ] path.parent_path
[ OK ] path.parent_path (0 ms)
[ RUN ] path.posix_iostream
[ OK ] path.posix_iostream (0 ms)
[ RUN ] path.filesystem_error
[ OK ] path.filesystem_error (0 ms)
[ RUN ] path.posix_status
[ OK ] path.posix_status (2 ms)
[ RUN ] path.is_wrappers
[ OK ] path.is_wrappers (0 ms)
[ RUN ] path.permissions
[ OK ] path.permissions (0 ms)
[ RUN ] path.posix_status_perms
[ OK ] path.posix_status_perms (0 ms)
[ RUN ] path.posix_directory_iterators
[ OK ] path.posix_directory_iterators (0 ms)
[----------] 17 tests from path (2 ms total)
[----------] 7 tests from point
[ RUN ] point.construction
[ OK ] point.construction (0 ms)
[ RUN ] point.constexpr
[ OK ] point.constexpr (0 ms)
[ RUN ] point.addition
[ OK ] point.addition (0 ms)
[ RUN ] point.subtraction
[ OK ] point.subtraction (0 ms)
[ RUN ] point.scalar_prod
[ OK ] point.scalar_prod (0 ms)
[ RUN ] point.norm
[ OK ] point.norm (0 ms)
[ RUN ] point.dot
[ OK ] point.dot (0 ms)
[----------] 7 tests from point (0 ms total)
[----------] 1 test from probe
[ RUN ] probe.fvm_lowered_cell
[ OK ] probe.fvm_lowered_cell (0 ms)
[----------] 1 test from probe (0 ms total)
[----------] 25 tests from range
[ RUN ] range.list_iterator
[ OK ] range.list_iterator (0 ms)
[ RUN ] range.pointer
[ OK ] range.pointer (0 ms)
[ RUN ] range.empty
[ OK ] range.empty (0 ms)
[ RUN ] range.size_implementation
[ OK ] range.size_implementation (0 ms)
[ RUN ] range.input_iterator
[ OK ] range.input_iterator (0 ms)
[ RUN ] range.const_iterator
[ OK ] range.const_iterator (0 ms)
[ RUN ] range.view
[ OK ] range.view (0 ms)
[ RUN ] range.sentinel
[ OK ] range.sentinel (0 ms)
[ RUN ] range.strictify
[ OK ] range.strictify (0 ms)
[ RUN ] range.range_view
[ OK ] range.range_view (0 ms)
[ RUN ] range.range_pointer_view
[ OK ] range.range_pointer_view (0 ms)
[ RUN ] range.subrange
[ OK ] range.subrange (0 ms)
[ RUN ] range.max_element_by
[ OK ] range.max_element_by (0 ms)
[ RUN ] range.max_value
[ OK ] range.max_value (0 ms)
[ RUN ] range.minmax_value
[ OK ] range.minmax_value (0 ms)
[ RUN ] range.assign
[ OK ] range.assign (0 ms)
[ RUN ] range.fill
[ OK ] range.fill (0 ms)
[ RUN ] range.assign_from
[ OK ] range.assign_from (0 ms)
[ RUN ] range.sort
[ OK ] range.sort (0 ms)
[ RUN ] range.sum_by
[ OK ] range.sum_by (0 ms)
[ RUN ] range.is_sequence
[ OK ] range.is_sequence (0 ms)
[ RUN ] range.all_of_any_of
[ OK ] range.all_of_any_of (0 ms)
[ RUN ] range.is_sorted
[ OK ] range.is_sorted (0 ms)
[ RUN ] range.is_sorted_by
[ OK ] range.is_sorted_by (0 ms)
[ RUN ] range.reverse
[ OK ] range.reverse (0 ms)
[----------] 25 tests from range (0 ms total)
[----------] 5 tests from int_types/counter_range/0, where TypeParam = signed char
[ RUN ] int_types/counter_range/0.max_size
[ OK ] int_types/counter_range/0.max_size (0 ms)
[ RUN ] int_types/counter_range/0.extreme_size
[ OK ] int_types/counter_range/0.extreme_size (0 ms)
[ RUN ] int_types/counter_range/0.size
[ OK ] int_types/counter_range/0.size (0 ms)
[ RUN ] int_types/counter_range/0.at
[ OK ] int_types/counter_range/0.at (0 ms)
[ RUN ] int_types/counter_range/0.iteration
[ OK ] int_types/counter_range/0.iteration (0 ms)
[----------] 5 tests from int_types/counter_range/0 (0 ms total)
[----------] 5 tests from int_types/counter_range/1, where TypeParam = unsigned char
[ RUN ] int_types/counter_range/1.max_size
[ OK ] int_types/counter_range/1.max_size (0 ms)
[ RUN ] int_types/counter_range/1.extreme_size
[ OK ] int_types/counter_range/1.extreme_size (0 ms)
[ RUN ] int_types/counter_range/1.size
[ OK ] int_types/counter_range/1.size (0 ms)
[ RUN ] int_types/counter_range/1.at
[ OK ] int_types/counter_range/1.at (0 ms)
[ RUN ] int_types/counter_range/1.iteration
[ OK ] int_types/counter_range/1.iteration (0 ms)
[----------] 5 tests from int_types/counter_range/1 (0 ms total)
[----------] 5 tests from int_types/counter_range/2, where TypeParam = short
[ RUN ] int_types/counter_range/2.max_size
[ OK ] int_types/counter_range/2.max_size (0 ms)
[ RUN ] int_types/counter_range/2.extreme_size
[ OK ] int_types/counter_range/2.extreme_size (0 ms)
[ RUN ] int_types/counter_range/2.size
[ OK ] int_types/counter_range/2.size (0 ms)
[ RUN ] int_types/counter_range/2.at
[ OK ] int_types/counter_range/2.at (0 ms)
[ RUN ] int_types/counter_range/2.iteration
[ OK ] int_types/counter_range/2.iteration (0 ms)
[----------] 5 tests from int_types/counter_range/2 (0 ms total)
[----------] 5 tests from int_types/counter_range/3, where TypeParam = unsigned short
[ RUN ] int_types/counter_range/3.max_size
[ OK ] int_types/counter_range/3.max_size (0 ms)
[ RUN ] int_types/counter_range/3.extreme_size
[ OK ] int_types/counter_range/3.extreme_size (0 ms)
[ RUN ] int_types/counter_range/3.size
[ OK ] int_types/counter_range/3.size (0 ms)
[ RUN ] int_types/counter_range/3.at
[ OK ] int_types/counter_range/3.at (0 ms)
[ RUN ] int_types/counter_range/3.iteration
[ OK ] int_types/counter_range/3.iteration (0 ms)
[----------] 5 tests from int_types/counter_range/3 (0 ms total)
[----------] 5 tests from int_types/counter_range/4, where TypeParam = int
[ RUN ] int_types/counter_range/4.max_size
[ OK ] int_types/counter_range/4.max_size (0 ms)
[ RUN ] int_types/counter_range/4.extreme_size
[ OK ] int_types/counter_range/4.extreme_size (0 ms)
[ RUN ] int_types/counter_range/4.size
[ OK ] int_types/counter_range/4.size (0 ms)
[ RUN ] int_types/counter_range/4.at
[ OK ] int_types/counter_range/4.at (0 ms)
[ RUN ] int_types/counter_range/4.iteration
[ OK ] int_types/counter_range/4.iteration (0 ms)
[----------] 5 tests from int_types/counter_range/4 (0 ms total)
[----------] 5 tests from int_types/counter_range/5, where TypeParam = unsigned int
[ RUN ] int_types/counter_range/5.max_size
[ OK ] int_types/counter_range/5.max_size (0 ms)
[ RUN ] int_types/counter_range/5.extreme_size
[ OK ] int_types/counter_range/5.extreme_size (0 ms)
[ RUN ] int_types/counter_range/5.size
[ OK ] int_types/counter_range/5.size (0 ms)
[ RUN ] int_types/counter_range/5.at
[ OK ] int_types/counter_range/5.at (0 ms)
[ RUN ] int_types/counter_range/5.iteration
[ OK ] int_types/counter_range/5.iteration (0 ms)
[----------] 5 tests from int_types/counter_range/5 (0 ms total)
[----------] 5 tests from int_types/counter_range/6, where TypeParam = long
[ RUN ] int_types/counter_range/6.max_size
[ OK ] int_types/counter_range/6.max_size (0 ms)
[ RUN ] int_types/counter_range/6.extreme_size
[ OK ] int_types/counter_range/6.extreme_size (0 ms)
[ RUN ] int_types/counter_range/6.size
[ OK ] int_types/counter_range/6.size (0 ms)
[ RUN ] int_types/counter_range/6.at
[ OK ] int_types/counter_range/6.at (0 ms)
[ RUN ] int_types/counter_range/6.iteration
[ OK ] int_types/counter_range/6.iteration (0 ms)
[----------] 5 tests from int_types/counter_range/6 (1 ms total)
[----------] 5 tests from int_types/counter_range/7, where TypeParam = unsigned long
[ RUN ] int_types/counter_range/7.max_size
[ OK ] int_types/counter_range/7.max_size (0 ms)
[ RUN ] int_types/counter_range/7.extreme_size
[ OK ] int_types/counter_range/7.extreme_size (0 ms)
[ RUN ] int_types/counter_range/7.size
[ OK ] int_types/counter_range/7.size (0 ms)
[ RUN ] int_types/counter_range/7.at
[ OK ] int_types/counter_range/7.at (0 ms)
[ RUN ] int_types/counter_range/7.iteration
[ OK ] int_types/counter_range/7.iteration (0 ms)
[----------] 5 tests from int_types/counter_range/7 (0 ms total)
[----------] 5 tests from int_types/counter_range/8, where TypeParam = long
[ RUN ] int_types/counter_range/8.max_size
[ OK ] int_types/counter_range/8.max_size (0 ms)
[ RUN ] int_types/counter_range/8.extreme_size
[ OK ] int_types/counter_range/8.extreme_size (0 ms)
[ RUN ] int_types/counter_range/8.size
[ OK ] int_types/counter_range/8.size (0 ms)
[ RUN ] int_types/counter_range/8.at
[ OK ] int_types/counter_range/8.at (0 ms)
[ RUN ] int_types/counter_range/8.iteration
[ OK ] int_types/counter_range/8.iteration (0 ms)
[----------] 5 tests from int_types/counter_range/8 (0 ms total)
[----------] 1 test from segment
[ RUN ] segment.kinfs
[ OK ] segment.kinfs (0 ms)
[----------] 1 test from segment (0 ms total)
[----------] 13 tests from schedule
[ RUN ] schedule.regular
[ OK ] schedule.regular (0 ms)
[ RUN ] schedule.regular_invariants
/var/tmp/rpm-tmp.wMLONn: line 35: 4084816 Aborted (core dumped) LD_LIBRARY_PATH=$LD_LIBRARY_PATH:./lib/ ./bin/unit
Hardware information:
Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Byte Order: Little Endian
Address sizes: 46 bits physical, 48 bits virtual
Compiler:
gcc-9.2.1
Complete list of packages attached. The complete build log is also attached:
arbor-build-log.txt arbor-root-log.txt
Additional question: is libarborsup.so meant to be a public library for use? It isn’t installed in /usr/lib64 etc, but is required by unit to run the tests. Here, I’ve specified LD_LIBRARY_PATH to ensure it is found.
Thanks,
About this issue
- Original URL
- State: closed
- Created 5 years ago
- Comments: 18 (12 by maintainers)
Commits related to this issue
- Fix for improper vector element access. Fixes #917. * Avoid use of empty ranges determined by expressions `&vector[i]` where i equals vector.size(). Replace with expressions using `vector.data()` or... — committed to halfflat/arbor by halfflat 5 years ago
- Fix for improper vector element access. (#919) Avoid use of empty ranges determined by expressions `&vector[i]` where i equals vector.size(). Replace with expressions using `vector.data()` or subrang... — committed to arbor-sim/arbor by halfflat 5 years ago
The crash is actually an assertion failure, because Fedora builds with -D_GLIBCXX_ASSERTIONS to find misuses of the C++ STL classes. This particular assertion failure means a vector access specified an index that is >= the size of the vector. I’ve seen this happen in a lot of projects. Most often it is because the code attempted to access element 0 of an empty vector. That is the case here. The problem is this code in arbor/include/arbor/schedule.hpp:
That can be called with an empty vector v. Index 0 is invalid in that case.
Hi! Thanks for the detailed info in the report!
I’ll look further into this a little later in the week, but as noted in #916, we haven’t tested or attempted to support installing Arbor as a shared library.
libarborsupis only for internal use as things stand — when built as a static library (which it would normally do by default), the unit test executable will be statically linked against it.