ANTs: DenoiseImage is unreasonably slow
Running:
DenoiseImage -d 3 -i input.nii.gz -n Rician -o denoise.nii.gz --verbose
Seems to take an excessive amount of time.
In the meantime I can do:
> nii2mnc input.nii.gz input.mnc
> minc_anlm --rician input.mnc denoise.mnc
> mnc2nii denoise.mnc denoise.nii.gz
While DenoiseImage makes about 5% progress, sharing the same CPUs.
All the MINC commands are single threaded to top it off.
I think there may be a very significant bottleneck somewhere.
Square difference map between DenoiseImage and minc_anlm:
About this issue
- Original URL
- State: closed
- Created 7 years ago
- Comments: 30 (23 by maintainers)
https://github.com/stnava/ANTs/commit/3b46c124b4c75626bf8c5535eb596b2521998ccf